Browse Element(s) Details


OsAffx.24032.1.S1_at

Description tigr:9629.m07296
TID=OsAffx.24032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7365011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24032.1.S1_at--893--6291Chr01:42995200..42995224 (25 bp)
GATGATCCTTTGTATCAGCCTCGCC
LOC_Os01g73650
OsAffx.24032.1.S1_at--223--6532Chr01:42995276..42995500 (25 bp)
GATTTCAAAGGCCTTACATCAAGAA
LOC_Os01g73650
OsAffx.24032.1.S1_at--989--6171Chr01:42997512..42997536 (25 bp)
GAGGAGCTTCAATACGGCGGAACTA
LOC_Os01g73650
OsAffx.24032.1.S1_at--309--5231Chr01:42997918..42997942 (25 bp)
GAATAGTATGCGTACCTTCAAGGTC
LOC_Os01g73650
OsAffx.24032.1.S1_at--808--6971Chr01:42997929..42997953 (25 bp)
GTACCTTCAAGGTCAACTTTTGGAG
LOC_Os01g73650
OsAffx.24032.1.S1_at--318--3271Chr01:42997942..42997966 (25 bp)
CAACTTTTGGAGGAGACTGTCTCAG
LOC_Os01g73650
OsAffx.24032.1.S1_at--784--6311Chr01:42997966..42997990 (25 bp)
GATGAAGGCTGATCACGAGCCGTCA
LOC_Os01g73650
OsAffx.24032.1.S1_at--257--9691Chr01:42997978..42998002 (25 bp)
TCACGAGCCGTCAGCGAGCAACAAG
LOC_Os01g73650
OsAffx.24032.1.S1_at--297--5951Chr01:42997993..42998017 (25 bp)
GAGCAACAAGAGACTCCCTGTTATT
LOC_Os01g73650
OsAffx.24032.1.S1_at--498--5991Chr01:42998002..42998026 (25 bp)
GAGACTCCCTGTTATTAACCATAAT
LOC_Os01g73650
OsAffx.24032.1.S1_at--761--9751Chr01:42998371..42998395 (25 bp)
TAAACGGTATGCTACCTTGACGCCC
LOC_Os01g73650
Target Sequence 
GATGATCCTTTGTATCAGCCTCGCCATCTTCTTCTTGGCCTGACCACCACCACCACACACACACATCCCAGGTTCAGATT
TCAAAGGCCTTACATCAAGAAAGTTAACACAAAGAAGATGCGTGGCATTGGTGAGAGCGGAGGCGCAGCGGAGGCCGGCG
AGTGGGGGCGTGACGGGGAGGGAGGAGCTTCAATACGGCGGAACTATAAAAAGGCCCTAATCCCAACCAACACCTGCATG
AATAGTATGCGTACCTTCAAGGTCAACTTTTGGAGGAGACTGTCTCAGATGAAGGCTGATCACGAGCCGTCAGCGAGCAA
CAAGAGACTCCCTGTTATTAACCATAATTACAAAAGTAAACGGTATGCTACCTTGACGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis