Browse Element(s) Details


Os.42980.1.S1_at

Description gb:CB670676
DB_XREF= gi:29674401
DB_XREF=OSJNEe03N24.r
CLONE=OSJNEe03N24
TID=Os.42980.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.42980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1656_A11.5 (OJ1656_A11.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7369011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed
LOC_Os01g73760Os.8794.3.S1_x_at11/111+43050362..43053433tRNA delta-isopentenylpyrophosphate transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42980.1.S1_at--132--6031Chr01:43022977..43023001 (25 bp)
GAGATGGGATCTTGGCATGTGCCTA
LOC_Os01g73690
Os.42980.1.S1_at--655--5911Chr01:43022928..43022952 (25 bp)
GAGCTAGGATTTGGCTTTGTATTGA
LOC_Os01g73690
Os.42980.1.S1_at--567--8771Chr01:43022911..43022935 (25 bp)
TGTATTGATAGGACAGGGCACTGCA
LOC_Os01g73690
Os.42980.1.S1_at--1149--7591Chr01:43022896..43022920 (25 bp)
GGGCACTGCAAACATCCCCATGAAG
LOC_Os01g73690
Os.42980.1.S1_at--278--8711Chr01:43022852..43022876 (25 bp)
TGTCCAGGATGTATCTCCCACCGAG
LOC_Os01g73690
Os.42980.1.S1_at--590--1791Chr01:43022833..43022857 (25 bp)
ACCGAGGCATCTCATGGATGTGAGC
LOC_Os01g73690
Os.42980.1.S1_at--99--3491Chr01:43022794..43022818 (25 bp)
CATAATGGTGGCTCCTTAACCGGTA
LOC_Os01g73690
Os.42980.1.S1_at--718--10011Chr01:43022741..43022765 (25 bp)
TAGCTTGAGGTGTCGTTCCTGAGCA
LOC_Os01g73690
Os.42980.1.S1_at--421--4951Chr01:43022696..43022720 (25 bp)
GCATTCTGCTGATGTATTTCTCAAC
LOC_Os01g73690
Os.42980.1.S1_at--683--4751Chr01:43022590..43022614 (25 bp)
GCTGAGCTCCGGTGGGTTAGATTTT
LOC_Os01g73690
Os.42980.1.S1_at--957--151Chr01:43022570..43022594 (25 bp)
ATTTTGTTGCGACATTTTTGGCGAA
LOC_Os01g73690
Target Sequence 
GAGATGGGATCTTGGCATGTGCCTATGGAGGAGAAATCTGGTGATGACANGAGCTAGGATTTGGCTTTGTATTGATAGGA
CAGGGCACTGCAAACATCCCCATGAAGCTCCTGCAGCAAACGGGGTTGTCCAGGATGTATCTCCCACCGAGGCATCTCAT
GGATGTGAGCAGAGGCGAGCAGAACATAATGGTGGCTCCTTAACCGGTAAAAGAAAGGATAGAAATTGATCGCCNNNNNN
NNNNNNNNATGTAGCTTGAGGTGTCGTTCCTGAGCAGAGNAGGCATATTGTNTTTTGCATTCTGCTGATGTATTTCTCAA
CTAGGGANGCAGCGGCGGTGCATCCCAANATNCCCATATACANGGGNCNAGAAACGCCNTAAACTACACTAAGGNGAGCT
AAGCTGAGCTCCGGTGGGTTAGATTTTGTTGCGACATTTTTGGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis