Browse Element(s) Details


Os.8794.3.S1_x_at

Description gb:NM_189431.1
DB_XREF= gi:34905945
GEN=OJ1656_A11.14
TID=Os.8794.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8794 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) similar to tRNA isopentenyltransferase (OJ1656_A11.14), mRNA.
PROD=similar to tRNA isopentenyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7376011/11tRNA delta-isopentenylpyrophosphate transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed
LOC_Os01g73760Os.8794.3.S1_x_at11/111+43050362..43053433tRNA delta-isopentenylpyrophosphate transferase family protein, expressed
LOC_Os01g73770Os.40428.1.S1_at11/111+43054274..43055187CRT/DRE binding factor 1, putative, expressed
LOC_Os01g73780Os.8226.1.S1_at10/111+43062842..43064765expressed protein
LOC_Os01g73790Os.4743.1.S1_at11/111+43065613..43069022NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009691biological_processcytokinin biosynthesis
GO:0005829cellular_componentcytosol
GO:0004811molecular_functiontRNA isopentenyltransferase activity
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8794.3.S1_x_at--82--6391Chr01:43052024..43052048 (25 bp)
GATCGAGAGGCCACTTATACCCAAG
LOC_Os01g73760
Os.8794.3.S1_x_at--277--6251Chr01:43052131..43052155 (25 bp)
GATGGATTCCTGTACAACTATGGCA
LOC_Os01g73760
Os.8794.3.S1_x_at--631--2531Chr01:43052146..43052170 (25 bp)
AACTATGGCAGGTCTCCATGATGAT
LOC_Os01g73760
Os.8794.3.S1_x_at--220--2411Chr01:43052215..43052239 (25 bp)
AAACACTCGCAGACTTGTTCGACGT
LOC_Os01g73760
Os.8794.3.S1_x_at--540--1451Chr01:43052379..43052501 (25 bp)
AGAAGCTTTCTATGGTGCCACTGCT
LOC_Os01g73760
Os.8794.3.S1_x_at--840--7271Chr01:43052491..43052515 (25 bp)
GTGCCACTGCTGACTCATGGAACAT
LOC_Os01g73760
Os.8794.3.S1_x_at--1142--2311Chr01:43052517..43052541 (25 bp)
AAAGTTGTGAAACCTTGCGTGGATA
LOC_Os01g73760
Os.8794.3.S1_x_at--715--7871Chr01:43052589..43052613 (25 bp)
GGTTCTAGTGTAACTGGAAGCCCTA
LOC_Os01g73760
Os.8794.3.S1_x_at--880--2651Chr01:43052606..43052630 (25 bp)
AAGCCCTAGGATGTCTTCAAGAGAG
LOC_Os01g73760
Os.8794.3.S1_x_at--1079--6191Chr01:43052795..43052818 (24 bp)
GAGGCCTGTGATAACCGGGTACTTC
LOC_Os01g73760
Os.8794.3.S1_x_at--475--2951Chr01:43052849..43052873 (25 bp)
AAGGCCGATGCCACCGTAAAAGAGT
LOC_Os01g73760
Target Sequence 
GATCGAGAGGCCACTTATACCCAAGGGCTGCGGCAGGCCATTGGTGTTCGTGAATTTGATGAGTTTTTCAGATTTTATTT
TGCAAGGAAGGAAACCGGTGAGATAAAGATGGATTCCTGTACAACTATGGCAGGTCTCCATGATGATAACCTGAAGGGCT
TATTGGATGAAGCAGTCTCACAACTAAAAGCAAACACTCGCAGACTTGTTCGACGTCAAAGACGAAGGCTGCATCGGTTG
AATAAATATTTTGAGTGGAACTTGCGTCATATTGATGCAACAGAAGCTTTCTATGGTGCCACTGCTGACTCATGGAACAT
GAAAGTTGTGAAACCTTGCGTGGATATTGTTAGAGATTTCTTGTCTGATGATACAATTTTGGCAAGCAGAGATGGTTCTA
GTGTAACTGGAAGCCCTAGGATGTCTTCAAGAGAGTTGTGGACTCAATATGTTTGTGAGGCCTGTGATAACCGGGTACTT
CGGGGAACGCATGAGTGGGAGCAACACAAGCAAGGCCGATGCCACCGTAAAAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8794.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis