Browse Element(s) Details


Os.4743.1.S1_at

Description gb:AK070623.1
DB_XREF= gi:32980647
TID=Os.4743.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1656_A11.18 (OJ1656_A11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063F13, full insert sequence.
FL= gb:AK070623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7379011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed
LOC_Os01g73760Os.8794.3.S1_x_at11/111+43050362..43053433tRNA delta-isopentenylpyrophosphate transferase family protein, expressed
LOC_Os01g73770Os.40428.1.S1_at11/111+43054274..43055187CRT/DRE binding factor 1, putative, expressed
LOC_Os01g73780Os.8226.1.S1_at10/111+43062842..43064765expressed protein
LOC_Os01g73790Os.4743.1.S1_at11/111+43065613..43069022NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g73800Os.48590.1.A1_at8/111+43079854..43083967expressed protein
LOC_Os01g73810NANA1+43084679..43085455cation/hydrogen exchanger, putative
LOC_Os01g73820OsAffx.24033.1.S1_x_at11/111+43087187..43090370hypothetical protein
LOC_Os01g73820OsAffx.24033.2.S1_at8/111+43087187..43090370hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009226biological_processnucleotide-sugar biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0048040molecular_functionUDP-glucuronate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4743.1.S1_at--460--5351Chr01:43066152..43066176 (25 bp)
GAAGACCCCTCTCAAGGATTTGCTG
LOC_Os01g73790
Os.4743.1.S1_at--565--2051Chr01:43066121..43066145 (25 bp)
ACATTGACCTACCAGCACAAGACTT
LOC_Os01g73790
Os.4743.1.S1_at--515--2292Chr04:31844344..31844366 (22 bp)
AAATGTCACAGGCTTCAGCGTCGAG
NONE
Os.4743.1.S1_at--122--5631Chr01:43066047..43066071 (25 bp)
GACAACACGCTCCAATCCATAGATG
LOC_Os01g73790
Os.4743.1.S1_at--633--4811Chr01:43066013..43066037 (25 bp)
GCTCTTGTAGAGCACTGTCAGTGGC
LOC_Os01g73790
Os.4743.1.S1_at--729--3871Chr01:43065999..43066023 (25 bp)
CTGTCAGTGGCTATAATCGTTTGGA
LOC_Os01g73790
Os.4743.1.S1_at--151--7691Chr01:43065879..43065903 (25 bp)
GGGTTATCCACCATATCTGTGGCAG
LOC_Os01g73790
Os.4743.1.S1_at--775--9451Chr01:43065864..43065888 (25 bp)
TCTGTGGCAGAGTCGATGTATTCAT
LOC_Os01g73790
Os.4743.1.S1_at--802--8671Chr01:43065817..43065841 (25 bp)
TGTGTCATTCTTTCTTATTGCTTCG
LOC_Os01g73790
Os.4743.1.S1_at--198--10671Chr01:43065800..43065824 (25 bp)
TTGCTTCGTCGGTGAGAGATGTTCT
LOC_Os01g73790
Os.4743.1.S1_at--409--6951Chr01:43065643..43065667 (25 bp)
GTAGTTGTGATTCATATGACCGACT
LOC_Os01g73790
Target Sequence 
GAAGACCCCTCTCAAGGATTTGCTGGAGACAACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAA
TGTCACAGGCTTCAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAG
TGGCTATAATCGTTTGGAAGTGGAATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCA
ACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACC
TTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCA
AGGAAATTATGGGCTGGAAGCTATAATGGTTGTGANGTTAAGTTCTTTGAGTTTAGTACAGCAACTAGTAGTAGGCTGTT
AGAAGCNAAATCTGCAAATTTCACTACTTGGTAGTTGTGATTCATATGACCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis