Browse Element(s) Details


OsAffx.24033.2.S1_at

Description tigr:9629.m07314
TID=OsAffx.24033.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g738208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73780Os.8226.1.S1_at10/111+43062842..43064765expressed protein
LOC_Os01g73790Os.4743.1.S1_at11/111+43065613..43069022NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g73800Os.48590.1.A1_at8/111+43079854..43083967expressed protein
LOC_Os01g73810NANA1+43084679..43085455cation/hydrogen exchanger, putative
LOC_Os01g73820OsAffx.24033.1.S1_x_at11/111+43087187..43090370hypothetical protein
LOC_Os01g73820OsAffx.24033.2.S1_at8/111+43087187..43090370hypothetical protein
LOC_Os01g73830OsAffx.24034.1.S1_x_at10/111+43098075..43099890expressed protein
LOC_Os01g73840Os.7677.1.S1_x_at11/111+43101682..43105473expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24033.2.S1_at--225--5031NONE
GCAGTATGTTGCAAGCTGGCTTATA
NONE
OsAffx.24033.2.S1_at--16--6931NONE
GTATGTTGCAAGCTGGCTTATAGCC
NONE
OsAffx.24033.2.S1_at--13--10231Chr01:43089328..43089352 (25 bp)
TATTGTACCTGCTCGCATCATAGTA
LOC_Os01g73820
OsAffx.24033.2.S1_at--788--9971Chr01:43089333..43089357 (25 bp)
TACCTGCTCGCATCATAGTACTTGT
LOC_Os01g73820
OsAffx.24033.2.S1_at--6--4811Chr01:43089338..43089362 (25 bp)
GCTCGCATCATAGTACTTGTCCTGA
LOC_Os01g73820
OsAffx.24033.2.S1_at--147--4971Chr01:43089342..43089366 (25 bp)
GCATCATAGTACTTGTCCTGAGGAG
LOC_Os01g73820
OsAffx.24033.2.S1_at--557--7011Chr01:43089350..43089374 (25 bp)
GTACTTGTCCTGAGGAGACTTTGAC
LOC_Os01g73820
OsAffx.24033.2.S1_at--1097--6171Chr01:43089361..43089385 (25 bp)
GAGGAGACTTTGACACAGGATCCCC
LOC_Os01g73820
OsAffx.24033.2.S1_at--172--2131Chr01:43089375..43089399 (25 bp)
ACAGGATCCCCCATTAGCGGAGATA
LOC_Os01g73820
OsAffx.24033.2.S1_at--613--131Chr01:43089387..43089411 (25 bp)
ATTAGCGGAGATAGCTGGACCTGGT
LOC_Os01g73820
OsAffx.24033.2.S1_at--19--10011NONE
TAGCTGGACCTGGTGAGACAACGAA
NONE
Target Sequence 
GCAGTATGTTGCAAGCTGGCTTATAGCCTGCTATTGTACCTGCTCGCATCATAGTACTTGTCCTGAGGAGACTTTGACAC
AGGATCCCCCATTAGCGGAGATAGCTGGACCTGGTGAGACAACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24033.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis