Browse Element(s) Details


OsAffx.24034.1.S1_x_at

Description gb:NM_189440.1
DB_XREF= gi:34905963
GEN=OJ1656_A11.23
TID=OsAffx.24034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1656_A11.23 (OJ1656_A11.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7383010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73800Os.48590.1.A1_at8/111+43079854..43083967expressed protein
LOC_Os01g73810NANA1+43084679..43085455cation/hydrogen exchanger, putative
LOC_Os01g73820OsAffx.24033.1.S1_x_at11/111+43087187..43090370hypothetical protein
LOC_Os01g73820OsAffx.24033.2.S1_at8/111+43087187..43090370hypothetical protein
LOC_Os01g73830OsAffx.24034.1.S1_x_at10/111+43098075..43099890expressed protein
LOC_Os01g73840Os.7677.1.S1_x_at11/111+43101682..43105473expressed protein
LOC_Os01g73850NANA1+43115969..43116601hypothetical protein
LOC_Os01g73860OsAffx.2472.2.S1_at11/111+43123292..43126338hypothetical protein
LOC_Os01g73860OsAffx.1155.1.S1_at1/111+43123292..43126338hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24034.1.S1_x_at--33--2711Chr01:43098999..43099023 (25 bp)
AAGCAGATCCATCCTGACTGTGATA
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--553--5111Chr01:43099116..43099140 (25 bp)
GCACTTGTGGCGTCTGATTCTAAAT
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--487--7111Chr01:43099143..43099167 (25 bp)
GTCAGATCCAAGCTGCAACTCATTG
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--1084--11Chr01:43099164..43099188 (25 bp)
ATTGGTTTTACATGGCCTGACTACA
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--733--10231Chr01:43099250..43099274 (25 bp)
TTTGGATCCTTATGACTACCTGCGA
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--517--2611Chr01:43099284..43099308 (25 bp)
AACCTGGTCAAACATTGGCTCTCTC
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--21--9491Chr01:43099307..43099421 (25 bp)
TCTGCCCTCTAATCTACGGGAGAAG
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--517--8871Chr01:43099424..43099448 (25 bp)
TGATGATTACGCTTTCTTCCTTCGA
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--1067--8451NONE
TGGCCTCCGAATTTGGTTCTGTATA
NONE
OsAffx.24034.1.S1_x_at--315--2131Chr01:43099755..43099779 (25 bp)
ACAGGTTTTGATCGTGTCAGTGCCA
LOC_Os01g73830
OsAffx.24034.1.S1_x_at--921--1011Chr01:43099796..43099820 (25 bp)
AGGTTTTCGGAGTAGCAGCAGCTTT
LOC_Os01g73830
Target Sequence 
AAGCAGATCCATCCTGACTGTGATAGGTTTTTGAAATATATTGGTGCTGGGAATGTCAAGTGGTTAGAGGATTACCCGGA
TGAATGGAATGATGACAAAAAGGCCTGTTACTTGAAGGCACTTGTGGCGTCTGATTCTAAATATGTCAGATCCAAGCTGC
AACTCATTGGTTTTACATGGCCTGACTACAGTGACTTCCTCAACAACTTGATAACTGATCAAGTGACCAGATTGGACATA
AAGTACAACATTTTGGATCCTTATGACTACCTGCGATTGTGCAGAAACCTGGTCAAACATTGGCTCTCTCTGCCCTCTAA
TCTACGGGAGAAGAATGATGATTACGCTTTCTTCCTTCGAAAGATGGAGAAGTGGACACCGAGGATTTGGTGTAACCTGT
ATGAGGCCATTGGGTGGCCTCCGAATTTGGTTCTGTATATTTCTGAGTTGCAGCAGCAACAGGTTTTGATCGTGTCAGTG
CCAAATGAAAGAAATATCAAGGTTTTCGGAGTAGCAGCAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24034.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis