Browse Element(s) Details


OsAffx.1155.1.S1_at

Description gb:NM_189447.1
DB_XREF= gi:34905977
GEN=OJ1656_A11.30
TID=OsAffx.1155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1656_A11.30 (OJ1656_A11.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g738601/11hypothetical protein
LOC_Os08g443601/11Male sterility protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73830OsAffx.24034.1.S1_x_at10/111+43098075..43099890expressed protein
LOC_Os01g73840Os.7677.1.S1_x_at11/111+43101682..43105473expressed protein
LOC_Os01g73850NANA1+43115969..43116601hypothetical protein
LOC_Os01g73860OsAffx.2472.2.S1_at11/111+43123292..43126338hypothetical protein
LOC_Os01g73860OsAffx.1155.1.S1_at1/111+43123292..43126338hypothetical protein
LOC_Os01g73870Os.35344.18.S1_x_at9/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870Os.35344.3.S1_x_at7/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870OsAffx.22940.5.S1_x_at2/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73880Os.414.1.S1_at10/111+43138795..43142028Eukaryotic translation initiation factor 4E-1, putative, expressed
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
GO:0016628molecular_functionoxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1155.1.S1_at--83--8151Chr01:43127302..43127326 (25 bp)
GGAACACTACTACAAGCACGCATGC
NONE
OsAffx.1155.1.S1_at--487--9031Chr01:43127266..43127290 (25 bp)
TGCACTGCGCAGACGACCAATCAAA
NONE
OsAffx.1155.1.S1_at--139--711Chr01:43127224..43127248 (25 bp)
ATGAGGAACCCGCTCGCTCGCAAGA
NONE
OsAffx.1155.1.S1_at--878--2791Chr01:43127203..43127227 (25 bp)
AAGATGCCGCACAGGAAAGCCGTCC
NONE
OsAffx.1155.1.S1_at--348--7351Chr01:43127168..43127192 (25 bp)
GTGCAAACTGCAAAGTCGGCGCCGG
NONE
OsAffx.1155.1.S1_at--754--7351NONE
GTGAAATCATTTTCCAAGGATCGGA
NONE
OsAffx.1155.1.S1_at--793--2911Chr01:43126503..43126527 (25 bp)
AAGGATCGGATCAGTAGCAAGCAGC
NONE
OsAffx.1155.1.S1_at--257--8472Chr08:27785875..27785952 (24 bp)
TGGCCCATGCGGCAGCTCGATCGAT
LOC_Os08g44360
OsAffx.1155.1.S1_at--567--531Chr01:43126338..43126362 (25 bp)
ATCGCAGGCAGAGTCCTGTCCGGGA
NONE
OsAffx.1155.1.S1_at--605--4251Chr01:43126319..43126343 (25 bp)
CCGGGATGTGGATAGGACTTCGCTT
NONE
OsAffx.1155.1.S1_at--995--10811Chr01:43126275..43126299 (25 bp)
TTGGACATTGTCATCGGTATGGAAT
LOC_Os01g73860
Target Sequence 
GGAACACTACTACAAGCACGCATGCATGCCGGGCGGTGCACTGCGCAGACGACCAATCAAAATCCCGCCACCGCGCCGAT
GAGGAACCCGCTCGCTCGCAAGATGCCGCACAGGAAAGCCGTCCTCCAACCGCCGTGCAAACTGCAAAGTCGGCGCCGGC
TCAAGAGGAGGAGGAAATTAATTCATGGAACATGACGAATCTAATTAAAGACCAACAAGGAGAACCATATGTGAAATCAT
TTTCCAAGGATCGGATCAGTAGCAAGCAGCGAGGCAGTCGGCTCGGCTGTATGCGGCGGCTCAGCTGGGCCTTGCGCGAG
GACGTGGTGTCGGCCCAGAGCCTAGGGCCCAGTCGGGCAGGAGCGCAGCAGGCCTGCCGAAGCTGGCCCATGCGGCAGCT
CGATCGATCGATCGCAGGCAGAGTCCTGTCCGGGATGTGGATAGGACTTCGCTTTGGGGGGAGAGAGTTTAATTTGGACA
TTGTCATCGGTATGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis