Browse Element(s) Details


OsAffx.24035.1.S1_s_at

Description tigr:9629.m07321
TID=OsAffx.24035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=transcription initiation factor iia gamma chain (tfiia-gamma)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7389010/11Transcription initiation factor IIA gamma chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73860OsAffx.2472.2.S1_at11/111+43123292..43126338hypothetical protein
LOC_Os01g73860OsAffx.1155.1.S1_at1/111+43123292..43126338hypothetical protein
LOC_Os01g73870Os.35344.18.S1_x_at9/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870Os.35344.3.S1_x_at7/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870OsAffx.22940.5.S1_x_at2/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73880Os.414.1.S1_at10/111+43138795..43142028Eukaryotic translation initiation factor 4E-1, putative, expressed
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006367biological_processtranscription initiation from RNA polymerase II promoter
GO:0005672cellular_componenttranscription factor TFIIA complex
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24035.1.S1_s_at--213--591Chr01:43146420..43146444 (25 bp)
ATCCAAGTCCTCGTGCAGTTTGACA
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--729--8951Chr01:43146537..43146561 (25 bp)
TGACTAGCGCTTTGGAGCATCAGGT
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--1137--2891NONE
AAGGTTACTGTCAAGGGCCATCTGC
NONE
OsAffx.24035.1.S1_s_at--343--5611Chr01:43147512..43147536 (25 bp)
GACAATGTGTGGACTTTCATCCTAA
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--395--2811Chr01:43147587..43147611 (25 bp)
AAGATCGTGGCCTGCGATTCCAAAT
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--67--1391Chr01:43147672..43147696 (25 bp)
AGACCTGGCGCACCTGAAATATAAT
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--731--8791Chr01:43147766..43147790 (25 bp)
TGTTCATAGTTTCTGTCTGCCATCC
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--701--9691Chr01:43147794..43147818 (25 bp)
TCACTCATGGATCGATTTCTCTCTT
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--978--6111Chr01:43147826..43147850 (25 bp)
GAGTGATGGACCGATTTCTCTCCTC
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--536--6111Chr01:43147882..43147906 (25 bp)
GAGTGTGCTCTGTACCTAATCATGC
LOC_Os01g73890
OsAffx.24035.1.S1_s_at--213--9751Chr01:43147898..43147922 (25 bp)
TAATCATGCTCTCGCCGAAGGCAGA
LOC_Os01g73890
Target Sequence 
ATCCAAGTCCTCGTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGCAAGGTTACTGTCAAGGG
CCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAACAGATGCAATTTTCAAGAACGAAGAGATTA
CAGAGACAATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAG
CCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGCTCGTATCATG
AATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATC
GATTTCTCTCTTCTCTGTTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTG
TGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24035.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis