Browse Element(s) Details


Os.45984.1.S1_x_at

Description gb:NM_189450.1
DB_XREF= gi:34905983
GEN=P0518C01.2
TID=Os.45984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518C01.2 (P0518C01.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0518C01.2 (P0518C01.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7390011/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73860OsAffx.2472.2.S1_at11/111+43123292..43126338hypothetical protein
LOC_Os01g73860OsAffx.1155.1.S1_at1/111+43123292..43126338hypothetical protein
LOC_Os01g73870Os.35344.18.S1_x_at9/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870Os.35344.3.S1_x_at7/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870OsAffx.22940.5.S1_x_at2/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73880Os.414.1.S1_at10/111+43138795..43142028Eukaryotic translation initiation factor 4E-1, putative, expressed
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45984.1.S1_x_at--856--6151Chr01:43151417..43151441 (25 bp)
GAGGAGGTTGGCTATGTCGTCCCTA
LOC_Os01g73900
Os.45984.1.S1_x_at--253--5631Chr01:43151212..43151236 (25 bp)
GACACTTGCCTATCTATTGTCGGTG
LOC_Os01g73900
Os.45984.1.S1_x_at--1000--31Chr01:43151197..43151221 (25 bp)
ATTGTCGGTGTTCTCGGCCATAGAT
LOC_Os01g73900
Os.45984.1.S1_x_at--206--10251Chr01:43151172..43151196 (25 bp)
TTTGGGAGATCCTCGGTGCAAGCGC
LOC_Os01g73900
Os.45984.1.S1_x_at--368--7351Chr01:43151157..43151181 (25 bp)
GTGCAAGCGCTGGTTGTGGTCCCAA
LOC_Os01g73900
Os.45984.1.S1_x_at--128--4211Chr01:43150623..43150647 (25 bp)
CCCCGGCTATAATTGTTGCTACTGT
LOC_Os01g73900
Os.45984.1.S1_x_at--562--4851Chr01:43150606..43150630 (25 bp)
GCTACTGTTGCAAGCTTGTGCCAAA
LOC_Os01g73900
Os.45984.1.S1_x_at--492--2671Chr01:43150573..43150597 (25 bp)
AAGCGTGCTTTCAGTCTTCAGTCTA
LOC_Os01g73900
Os.45984.1.S1_x_at--431--6751Chr01:43150080..43150104 (25 bp)
GTTCATGTTCATGTCAACCCTGTAC
LOC_Os01g73900
Os.45984.1.S1_x_at--572--2651Chr01:43148704..43148728 (25 bp)
AAGCCTAGAGGTCCTTCTACTGGAA
LOC_Os01g73900
Os.45984.1.S1_x_at--93--10131Chr01:43148674..43148698 (25 bp)
TATGAATTTCAATGCCCGTGCTACA
LOC_Os01g73900
Target Sequence 
GAGGAGGTTGGCTATGTCGTCCCTACCGAGGTGCAGGAGCAATCCTTGCCTGTCCTCTTGTCTGGCCAAGACTGCATCCT
CCACGCACAGACGGGTTCTGGAAAGACACTTGCCTATCTATTGTCGGTGTTCTCGGCCATAGATTTTGGGAGATCCTCGG
TGCAAGCGCTGGTTGTGGTCCCAACCAGGGAGCTCGGCATGCAGGCAGAGCCCCCGGCTATAATTGTTGCTACTGTTGCA
AGCTTGTGCCAAATGATTGAGAAGCGTGCTTTCAGTCTTCAGTCTATGAGAGTATTAGTTATTGATGAGACTGATGTGGT
TCATGTTCATGTCAACCCTGTACAACCCATGCCCTCTCACCTCCAGCACAAATATGCGTCTGAGAAATCAAAGAAGGCTG
GACACCCTCCTTCAACTACTGTTGTTGTTGAATTCCTGAGAACTACGTACATGGGAAGCCTAGAGGTCCTTCTACTGGAA
GAAGATATGAATTTCAATGCCCGTGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45984.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis