Browse Element(s) Details


OsAffx.2472.2.S1_at

Description tigr:9629.m07318
TID=OsAffx.2472.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7386011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73830OsAffx.24034.1.S1_x_at10/111+43098075..43099890expressed protein
LOC_Os01g73840Os.7677.1.S1_x_at11/111+43101682..43105473expressed protein
LOC_Os01g73850NANA1+43115969..43116601hypothetical protein
LOC_Os01g73860OsAffx.2472.2.S1_at11/111+43123292..43126338hypothetical protein
LOC_Os01g73860OsAffx.1155.1.S1_at1/111+43123292..43126338hypothetical protein
LOC_Os01g73870Os.35344.18.S1_x_at9/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870Os.35344.3.S1_x_at7/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870OsAffx.22940.5.S1_x_at2/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73880Os.414.1.S1_at10/111+43138795..43142028Eukaryotic translation initiation factor 4E-1, putative, expressed
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2472.2.S1_at--1080--2471Chr01:43124480..43124504 (25 bp)
AACAGAGGACTCTACCAAGCAGTTA
LOC_Os01g73860
OsAffx.2472.2.S1_at--478--2711Chr01:43124464..43124488 (25 bp)
AAGCAGTTAAGATAGCCACCGGATT
LOC_Os01g73860
OsAffx.2472.2.S1_at--1042--10491Chr01:43124458..43124482 (25 bp)
TTAAGATAGCCACCGGATTCCCCAA
LOC_Os01g73860
OsAffx.2472.2.S1_at--203--6591Chr01:43124443..43124467 (25 bp)
GATTCCCCAAGATTACTGCCAAGTT
LOC_Os01g73860
OsAffx.2472.2.S1_at--1140--3211Chr01:43124424..43124448 (25 bp)
CAAGTTAGCTTATCTTGGCTTCCAT
LOC_Os01g73860
OsAffx.2472.2.S1_at--355--9591Chr01:43124328..43124436 (25 bp)
TCTTGGCTTCCATGAATTGGTATCT
LOC_Os01g73860
OsAffx.2472.2.S1_at--843--5191Chr01:43124315..43124339 (25 bp)
GAATTGGTATCTAGCATGAACTATG
LOC_Os01g73860
OsAffx.2472.2.S1_at--1161--971Chr01:43123733..43123757 (25 bp)
AGGATGAAGTTCTCGGGCTGATTGC
LOC_Os01g73860
OsAffx.2472.2.S1_at--259--2831Chr01:43123727..43123751 (25 bp)
AAGTTCTCGGGCTGATTGCAGAGGC
LOC_Os01g73860
OsAffx.2472.2.S1_at--501--4131Chr01:43123347..43123371 (25 bp)
CGCGGTTTTATGATGACTACATCAG
LOC_Os01g73860
OsAffx.2472.2.S1_at--667--5511Chr01:43123323..43123347 (25 bp)
GAAAAAAGATAGAAATTGCCCGAGC
LOC_Os01g73860
Target Sequence 
AACAGAGGACTCTACCAAGCAGTTAAGATAGCCACCGGATTCCCCAAGATTACTGCCAAGTTAGCTTATCTTGGCTTCCA
TGAATTGGTATCTAGCATGAACTATGATGTTTGTTTTTTTAAGGAGCTAGATGGTGTGTATTTTGAGATTTGGCAGCGGG
TCACCAAGCAAAAGATGAGTTTCAGAGATGCAATGAAGGAAGTCTACGAACTGAACAGGTTTCCGGTACGGCAACAAAAA
ATGAAATATGTACTGGAGATCAATGACTGCTCTCAATGGGAAGCGGAGTTTCATACTTGCACGGCTTGCATTACGGAGGA
AGTTGCAGAGGATGAAGTTCTCGGGCTGATTGCAGAGGCAGTTAAGAAGCTGAGGGATAAACCGCGGTTTTATGATGACT
ACATCAGAAAAAAGATAGAAATTGCCCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2472.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis