Browse Element(s) Details


OsAffx.20285.3.S1_at

Description tigr:9629.m07322
TID=OsAffx.20285.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DEADDEAH box RNA helicase protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7390011/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73860OsAffx.2472.2.S1_at11/111+43123292..43126338hypothetical protein
LOC_Os01g73860OsAffx.1155.1.S1_at1/111+43123292..43126338hypothetical protein
LOC_Os01g73870Os.35344.18.S1_x_at9/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870Os.35344.3.S1_x_at7/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73870OsAffx.22940.5.S1_x_at2/111+43131750..43137796transposon protein, putative, Mutator sub-class
LOC_Os01g73880Os.414.1.S1_at10/111+43138795..43142028Eukaryotic translation initiation factor 4E-1, putative, expressed
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20285.3.S1_at--573--10851Chr01:43150106..43150365 (25 bp)
TTGGGTCGTCAAAGCAAACTGATGT
LOC_Os01g73900
OsAffx.20285.3.S1_at--873--3491Chr01:43149614..43149638 (25 bp)
CATGTTTTACTATCCTTGCTTGAGA
LOC_Os01g73900
OsAffx.20285.3.S1_at--362--2931Chr01:43148526..43148550 (25 bp)
AAGGCTTTCTTCTAGTTTCCACTGA
LOC_Os01g73900
OsAffx.20285.3.S1_at--10--2731Chr01:43148495..43148519 (25 bp)
AAGCAGAGGGTTTGACCTCCCACAA
LOC_Os01g73900
OsAffx.20285.3.S1_at--663--10171Chr01:43148460..43148484 (25 bp)
TATACAACTTTGACCTTCCCAAGAC
LOC_Os01g73900
OsAffx.20285.3.S1_at--303--5831Chr01:43148449..43148473 (25 bp)
GACCTTCCCAAGACGGCTATTGACT
LOC_Os01g73900
OsAffx.20285.3.S1_at--858--4871Chr01:43148434..43148458 (25 bp)
GCTATTGACTATCTGCATCGTGCTG
LOC_Os01g73900
OsAffx.20285.3.S1_at--678--5971Chr01:43148397..43148421 (25 bp)
GAGAACCATTCTCCAAGTTAGCTTG
LOC_Os01g73900
OsAffx.20285.3.S1_at--515--1211Chr01:43148382..43148406 (25 bp)
AGTTAGCTTGCAGCGTGACAACCCT
LOC_Os01g73900
OsAffx.20285.3.S1_at--1117--6151Chr01:43148350..43148374 (25 bp)
GAGGATGAGCACTTTGTATTACAGA
LOC_Os01g73900
OsAffx.20285.3.S1_at--1141--3211Chr01:43148309..43148333 (25 bp)
CAAGTTCCATTGTGAAGAGCTACCT
LOC_Os01g73900
Target Sequence 
TTGGGTCGTCAAAGCAAACTGATGTGGTTCATGTTCATGTCAACCCTGTACAACCCATGCCCTCTCACCTCCAGCACAAA
TATGCGATCTGCAGTAAGAAGGAAAGGTTGCATGTTTTACTATCCTTGCTTGAGAAGGATGCACCAAAGTCAGGGATTAT
ATTTGTTGCTGAACAGTCTGAGAAATCAAAGAAGGCTGGACACCCTCCTTCAACTACTGTTGTTGTTGAATTCCTGAGAA
CTACGTACATGGGAAGCCTAGAGGAGGTCAAGGGAAAAGGCTTTCTTCTAGTTTCCACTGACATAGCAAGCAGAGGGTTT
GACCTCCCACAAACCAGCCACATATACAACTTTGACCTTCCCAAGACGGCTATTGACTATCTGCATCGTGCTGGAAGAAC
TGGGAGAGAACCATTCTCCAAGTTAGCTTGCAGCGTGACAACCCTCATAACAGAGGATGAGCACTTTGTATTACAGAGAT
TTCAGAATGAACTCAAGTTCCATTGTGAAGAGCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20285.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis