Browse Element(s) Details


Os.7677.1.S1_x_at

Description gb:AK071720.1
DB_XREF= gi:32981743
TID=Os.7677.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1656_A11.24 (OJ1656_A11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110K15, full insert sequence.
FL= gb:AK071720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7384011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73800Os.48590.1.A1_at8/111+43079854..43083967expressed protein
LOC_Os01g73810NANA1+43084679..43085455cation/hydrogen exchanger, putative
LOC_Os01g73820OsAffx.24033.1.S1_x_at11/111+43087187..43090370hypothetical protein
LOC_Os01g73820OsAffx.24033.2.S1_at8/111+43087187..43090370hypothetical protein
LOC_Os01g73830OsAffx.24034.1.S1_x_at10/111+43098075..43099890expressed protein
LOC_Os01g73840Os.7677.1.S1_x_at11/111+43101682..43105473expressed protein
LOC_Os01g73850NANA1+43115969..43116601hypothetical protein
LOC_Os01g73860OsAffx.2472.2.S1_at11/111+43123292..43126338hypothetical protein
LOC_Os01g73860OsAffx.1155.1.S1_at1/111+43123292..43126338hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7677.1.S1_x_at--1152--5331Chr01:43103135..43103159 (25 bp)
GAAGTTATCATTGGTGACAGCTCCT
LOC_Os01g73840
Os.7677.1.S1_x_at--815--5631Chr01:43103120..43103144 (25 bp)
GACAGCTCCTTTAATGTGGCCTGGA
LOC_Os01g73840
Os.7677.1.S1_x_at--177--8011Chr01:43103098..43103122 (25 bp)
GGATGGAGCGTTACACTCGTGTGTT
LOC_Os01g73840
Os.7677.1.S1_x_at--751--771Chr01:43103065..43103089 (25 bp)
ATGTGCAATTGCTCCTGTCAACAGC
LOC_Os01g73840
Os.7677.1.S1_x_at--748--6511Chr01:43103024..43103048 (25 bp)
GTTGGTGCAACTCTCTTACTTCCGT
LOC_Os01g73840
Os.7677.1.S1_x_at--193--8171Chr01:43102873..43102897 (25 bp)
GGAACAGCTGTTTCTCAACGGGTAT
LOC_Os01g73840
Os.7677.1.S1_x_at--808--5271Chr01:43102806..43102830 (25 bp)
GAATGTTCTACTCCAGTCGTGAAGC
LOC_Os01g73840
Os.7677.1.S1_x_at--670--6392Chr07:20565521..20566005 (25 bp)
GATCGATATTTGTCCATAAGCTGCA
NONE
Os.7677.1.S1_x_at--702--8811Chr01:43101936..43101960 (25 bp)
TGTTGCATGTTCTTTGGACCAGGTT
LOC_Os01g73840
Os.7677.1.S1_x_at--843--7811Chr01:43101907..43101931 (25 bp)
GGTCTTCTCTCTTTTGTGTTTGAGT
LOC_Os01g73840
Os.7677.1.S1_x_at--143--2291Chr01:43101798..43101822 (25 bp)
AAATGCCTTTGGCAACTCTGCGTTG
LOC_Os01g73840
Target Sequence 
GAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCTGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATT
GCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGA
GAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAACACATATTGT
TTCCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGT
GGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGG
ACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTC
TGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7677.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis