Browse Element(s) Details


Os.48590.1.A1_at

Description gb:CR285491
DB_XREF= gi:44672057
DB_XREF=CR285491
CLONE=p785c05p3
TID=Os.48590.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to Na+H+antiporter (OJ1656_A11.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g738008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73770Os.40428.1.S1_at11/111+43054274..43055187CRT/DRE binding factor 1, putative, expressed
LOC_Os01g73780Os.8226.1.S1_at10/111+43062842..43064765expressed protein
LOC_Os01g73790Os.4743.1.S1_at11/111+43065613..43069022NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g73800Os.48590.1.A1_at8/111+43079854..43083967expressed protein
LOC_Os01g73810NANA1+43084679..43085455cation/hydrogen exchanger, putative
LOC_Os01g73820OsAffx.24033.1.S1_x_at11/111+43087187..43090370hypothetical protein
LOC_Os01g73820OsAffx.24033.2.S1_at8/111+43087187..43090370hypothetical protein
LOC_Os01g73830OsAffx.24034.1.S1_x_at10/111+43098075..43099890expressed protein
LOC_Os01g73840Os.7677.1.S1_x_at11/111+43101682..43105473expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48590.1.A1_at--1003--3411Chr01:43080090..43080114 (25 bp)
CAGAAGAGGCTTAGTTTCACTTTTT
LOC_Os01g73800
Os.48590.1.A1_at--79--3551Chr01:43080060..43080084 (25 bp)
CATCTGTTTATGTAATATTGGTTAA
LOC_Os01g73800
Os.48590.1.A1_at--629--10831Chr01:43080023..43080047 (25 bp)
TTGGTAGTGGACACGATGTGGCTTT
LOC_Os01g73800
Os.48590.1.A1_at--427--3351Chr01:43080012..43080036 (25 bp)
CACGATGTGGCTTTTGTATGATATT
LOC_Os01g73800
Os.48590.1.A1_at--731--10071Chr01:43079972..43079996 (25 bp)
TAGTGGACACCGTATGTTTTTTGTA
LOC_Os01g73800
Os.48590.1.A1_at--128--5571Chr01:43079967..43079991 (25 bp)
GACACCGTATGTTTTTTGTAGGATA
LOC_Os01g73800
Os.48590.1.A1_at--526--6931Chr01:43079950..43079974 (25 bp)
GTAGGATATTGGTTAGCTGCTTGTT
LOC_Os01g73800
Os.48590.1.A1_at--865--4751NONE
GCTGCTTGTTAAGGTGGTAGTGCCA
NONE
Os.48590.1.A1_at--395--1051NONE
AGGTGGTAGTGCCACCACATGTCTT
NONE
Os.48590.1.A1_at--902--1131Chr01:43079917..43080398 (25 bp)
AGTGCCACCACATGTCTTTTGTAGT
LOC_Os01g73800
Os.48590.1.A1_at--356--4351NONE
CCACATGTCTTTTGTAGTGAACCAC
NONE
Target Sequence 
CAGAAGAGGCTTAGTTTCACTTTTTTTTTTCATCTGTTTATGTAATATTGGTTAACTATTGGTTAAGTTGGTAGTGGACA
CGATGTGGCTTTTGTATGATATTTGCTGGTTAAGGTGGTAGTGGACACCGTATGTTTTTTGTAGGATATTGGTTAGCTGC
TTGTTAAGGTGGTAGTGCCACCACATGTCTTTTGTAGTGAACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48590.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis