Browse Element(s) Details


Os.8226.1.S1_at

Description gb:AK103338.1
DB_XREF= gi:32988547
TID=Os.8226.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1656_A11.17 (OJ1656_A11.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126A10, full insert sequence.
FL= gb:AK103338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7378010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed
LOC_Os01g73760Os.8794.3.S1_x_at11/111+43050362..43053433tRNA delta-isopentenylpyrophosphate transferase family protein, expressed
LOC_Os01g73770Os.40428.1.S1_at11/111+43054274..43055187CRT/DRE binding factor 1, putative, expressed
LOC_Os01g73780Os.8226.1.S1_at10/111+43062842..43064765expressed protein
LOC_Os01g73790Os.4743.1.S1_at11/111+43065613..43069022NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g73800Os.48590.1.A1_at8/111+43079854..43083967expressed protein
LOC_Os01g73810NANA1+43084679..43085455cation/hydrogen exchanger, putative
LOC_Os01g73820OsAffx.24033.1.S1_x_at11/111+43087187..43090370hypothetical protein
LOC_Os01g73820OsAffx.24033.2.S1_at8/111+43087187..43090370hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8226.1.S1_at--716--4291NONE
CCTCTGGCAGGTTTATGCTCTTGGA
NONE
Os.8226.1.S1_at--227--4831Chr01:43063206..43063230 (25 bp)
GCTCTTGGAGCGTTTATTGTGTTGA
LOC_Os01g73780
Os.8226.1.S1_at--602--6031Chr01:43063145..43063169 (25 bp)
GAGATGATTCGCCTGATGGCCGATC
LOC_Os01g73780
Os.8226.1.S1_at--1029--1911Chr01:43063115..43063139 (25 bp)
ACGGGTCTTCTTAGTTTGCTCCAGA
LOC_Os01g73780
Os.8226.1.S1_at--35--4871Chr01:43063088..43063112 (25 bp)
GCTTTAGTCTCTGCTTTAAATCCTA
LOC_Os01g73780
Os.8226.1.S1_at--704--9131Chr01:43063046..43063070 (25 bp)
TGCGATGATGGTGCACCTCTCTAAT
LOC_Os01g73780
Os.8226.1.S1_at--401--1751Chr01:43063032..43063056 (25 bp)
ACCTCTCTAATCTATGTCCATCTGA
LOC_Os01g73780
Os.8226.1.S1_at--581--9471Chr01:43063012..43063036 (25 bp)
TCTGATTAGAGTTTTTCTTCCCCGT
LOC_Os01g73780
Os.8226.1.S1_at--819--8571Chr01:43062970..43062994 (25 bp)
TGGATTCTGTATTTGCCCATCATGC
LOC_Os01g73780
Os.8226.1.S1_at--1023--411Chr01:43062952..43062976 (25 bp)
ATCATGCGCAAGTGACTTCCTTTTC
LOC_Os01g73780
Os.8226.1.S1_at--456--9251Chr01:43062935..43062959 (25 bp)
TCCTTTTCCTTGCTGTCATGTTAGA
LOC_Os01g73780
Target Sequence 
CCTCTGGCAGGTTTATGCTCTTGGAGCGTTTATTGTGTTGAGATGGGCCTGGGTTAAGTGGAAAGAAAGCAAGGANAGAG
ATGATTCGCCTGATGGCCGATCCCCGGACGGGTCTTCTTAGTTTGCTCCAGAAAGCTTTAGTCTCTGCTTTAAATCCTAA
GAAGATAAAGATGTTGTGCGATGATGGTGCACCTCTCTAATCTATGTCCATCTGATTAGAGTTTTTCTTCCCCGTCATTG
TTGCCTTGTGTNTGGATTCTGTATTTGCCCATCATGCGCAAGTGACTTCCTTTTCCTTGCTGTCATGTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis