Browse Element(s) Details


Os.27288.2.S1_x_at

Description gb:AK072684.1
DB_XREF= gi:32982707
TID=Os.27288.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) aspartyl aminopeptidase-like protein (OJ1656_A11.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141A18, full insert sequence.
FL= gb:AK072684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7368011/11Aspartyl aminopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005773cellular_componentvacuole
GO:0042576molecular_functionaspartyl aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27288.2.S1_x_at--113--2931Chr01:43019606..43019630 (25 bp)
AAGGACTAGTTATCAAGCACAATGC
LOC_Os01g73680
Os.27288.2.S1_x_at--258--4851Chr01:43019644..43019668 (25 bp)
GCTACTAGTGCTGTGACAGCTTTTC
LOC_Os01g73680
Os.27288.2.S1_x_at--101--7891Chr01:43020026..43020050 (25 bp)
GGTTCAACTATTGGCCCCATACTTG
LOC_Os01g73680
Os.27288.2.S1_x_at--651--5731Chr01:43020077..43020101 (25 bp)
GACTGTGGTATTCCTCAGCTCTCAA
LOC_Os01g73680
Os.27288.2.S1_x_at--57--451Chr01:43022053..43022077 (25 bp)
ATCTTATCAGTTCCTCATGTTCAGT
LOC_Os01g73680
Os.27288.2.S1_x_at--999--9631Chr01:43022119..43022143 (25 bp)
TCAGAGTATCAGTTTTTTCTTGTCC
LOC_Os01g73680
Os.27288.2.S1_x_at--62--2511Chr01:43022145..43022169 (25 bp)
AACATCCCAATCTAATTCTACGCAT
LOC_Os01g73680
Os.27288.2.S1_x_at--137--272Chr07:7656147..7656541 (25 bp)
ATATGGTGACACATCGCCAAGCTCA
NONE
Os.27288.2.S1_x_at--782--8431Chr01:43022240..43022264 (25 bp)
GGCCTTACACATATCATACTCAGTT
LOC_Os01g73680
Os.27288.2.S1_x_at--966--10151Chr01:43022251..43022275 (25 bp)
TATCATACTCAGTTACTCAGGCCTG
LOC_Os01g73680
Os.27288.2.S1_x_at--907--6771Chr01:43022262..43022286 (25 bp)
GTTACTCAGGCCTGAATGGCAAGTT
LOC_Os01g73680
Target Sequence 
AAGGACTAGTTATCAAGCACAATGCNAACCAACGTTANGCTACTAGTGCTGTGACAGCTTTTCTNTTCAAAGAAATAGCA
AGACNTCATAATCTTCCTGTTCAGGAATTTGTTGTAAGGAATGATATGGGNTNGNGGTTCAACTATTGGCCCCATACTTG
CTTCTGGTGNTGGCATACNGGACTGNTGACTGTGGTATTCCTCAGCTCTCAATGCACAGCGNGCGAGAAATGTGTGGCAA
AGAAGACGTAGATACAACATACANGCACTTCAAAGCTTTNTTCGANATGTTCTCTGNNATTGNCCGGAAACTNAACGTAG
ACTAACTTTTANATCTTATCAGTTCCTCATGTTCAGTATTTGAATTTTTTTTTCCTGGATCAGAATAATGACCGTATATC
AGAGTATCAGTTTTTTCTTGTCCCAACATCCCAATCTAATTCTACGCATGACCAAGAGGGGTGAAATCATTTTACATGTA
AATATGGTGACACATCGCCAAGCTCACTTTTGAGAAGATGGCCTTACACATATCATACTCAGTTACTCAGGCCTGAATGG
CAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27288.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis