Browse Element(s) Details


Os.8761.3.S1_x_at

Description gb:NM_189420.1
DB_XREF= gi:34905923
GEN=OJ1656_A11.3
TID=Os.8761.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1656_A11.3 (OJ1656_A11.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1656_A11.3 (OJ1656_A11.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8761.3.S1_x_at--1141--3171Chr01:43014153..43014177 (25 bp)
CAATATCTCGACTTCTGCAAGGCAT
LOC_Os01g73670
Os.8761.3.S1_x_at--328--3851Chr01:43014167..43014191 (25 bp)
CTGCAAGGCATTGTCGAAGGAACTT
LOC_Os01g73670
Os.8761.3.S1_x_at--785--1391Chr01:43014293..43014317 (25 bp)
AGACTATGTCCTGAATAAACTGCCA
LOC_Os01g73670
Os.8761.3.S1_x_at--1050--3071Chr01:43014306..43014326 (21 bp)
AATAAACTGCCATCTTCTAAGTGGG
LOC_Os01g73670
Os.8761.3.S1_x_at--317--5231Chr01:43014412..43014436 (25 bp)
GAATATGCAGCAGAGGAGCCTACCA
LOC_Os01g73670
Os.8761.3.S1_x_at--1041--10491Chr01:43014442..43014466 (25 bp)
TTAAGATTGCCACCCGCTTTTCCAA
LOC_Os01g73670
Os.8761.3.S1_x_at--722--4891Chr01:43014457..43014481 (25 bp)
GCTTTTCCAAGATCACTGCTGCTTT
LOC_Os01g73670
Os.8761.3.S1_x_at--1109--4751Chr01:43014474..43014498 (25 bp)
GCTGCTTTGGCCTATAATGCCTACT
LOC_Os01g73670
Os.8761.3.S1_x_at--865--3491Chr01:43014624..43014648 (25 bp)
CATGGATAGCTTGTACTTTGAGATT
LOC_Os01g73670
Os.8761.3.S1_x_at--945--8051Chr01:43014846..43014870 (25 bp)
GGAGAATAACTGTTCCCACATGGAA
LOC_Os01g73670
Os.8761.3.S1_x_at--94--2571Chr01:43014853..43014989 (25 bp)
AACTGTGTTTCATGTTTGCACGGCA
LOC_Os01g73670
Target Sequence 
CAATATCTCGACTTCTGCAAGGCATTGTCGAAGGAACTTAAGTGGATGGAAGACTATGTCCTGAATAAACTGCCATCTTC
TAAGTGGGGAAGAATATGCAGCAGAGGAGCCTACCAAGCAATTAAGATTGCCACCCGCTTTTCCAAGATCACTGCTGCTT
TGGCCTATAATGCCTACTATGATTGTTTACAGCACATGCGCTTTTATGTTGCTTATTGCAAGGACATGGATAGCTTGTAC
TTTGAGATTTGGCAGCGGGTCAACATGCAAAAAAAGAGTTTCAGAGATTCTTTGGAGGAAGTCTACAACCTCAACAAGTT
CCCTTCACGGCAAGATAAAATGAAGGATGCATTGGAGAATAACTGTTCCCACATGGAAACTGTGTTTCATGTTTGCACGG
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8761.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis