Browse Element(s) Details


Os.8761.2.S1_at

Description gb:AK064854.1
DB_XREF= gi:32974872
TID=Os.8761.2
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1656_A11.3 (OJ1656_A11.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000H07, full insert sequence.
FL= gb:AK064854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8761.2.S1_at--994--10331Chr01:43015859..43015883 (25 bp)
TTTAGCGTACGTTGCAATCGTGCCT
LOC_Os01g73670
Os.8761.2.S1_at--423--3051Chr01:43015874..43015898 (25 bp)
AATCGTGCCTCGGAGTGATTCGACT
LOC_Os01g73670
Os.8761.2.S1_at--203--9451Chr01:43015883..43015907 (25 bp)
TCGGAGTGATTCGACTTGCTGATTC
LOC_Os01g73670
Os.8761.2.S1_at--119--3631Chr01:43015955..43015979 (25 bp)
CTTGTTGTTTGCTTTGTGGTCGACA
LOC_Os01g73670
Os.8761.2.S1_at--153--10191Chr01:43015998..43016022 (25 bp)
TATAGAGGCTCACAACCGTGTCTTT
LOC_Os01g73670
Os.8761.2.S1_at--388--2211Chr01:43016009..43016033 (25 bp)
ACAACCGTGTCTTTGTGCTAACTGC
LOC_Os01g73670
Os.8761.2.S1_at--622--7311Chr01:43016023..43016047 (25 bp)
GTGCTAACTGCCCTAGCTAGATTAT
LOC_Os01g73670
Os.8761.2.S1_at--48--3131Chr01:43016064..43016088 (25 bp)
AATTTGCTGCTTTATAGGACACTGA
LOC_Os01g73670
Os.8761.2.S1_at--339--1231Chr01:43016176..43016200 (25 bp)
AGTTGAGACTTCCTTTGAAATTGAG
LOC_Os01g73670
Os.8761.2.S1_at--1002--8211Chr01:43016200..43016224 (25 bp)
GGAATTGCATATAAGATCTCTGTAA
LOC_Os01g73670
Os.8761.2.S1_at--970--1431Chr01:43016224..43016248 (25 bp)
AGAACTGAACTAGCTCTGTGAGAAG
LOC_Os01g73670
Target Sequence 
TTTAGCGTACGTTGCAATCGTGCCTCGGAGTGATTCGACTTGCTGATTCGGAAGATGAAGTTTTTTTTTTNNNNNTGAAA
TTGGGCTATCCAATTAGCTTGTTGTTTGCTTTGTGGTCGACATGGATGAATGTGATTGTATATAGAGGCTCACAACCGTG
TCTTTGTGCTAACTGCCCTAGCTAGATTATGCAAGTTGATATCAGCAATTTGCTGCTTTATAGGACACTGAGAACAAAAT
ACATCTACAGGAGAGTTTTTTTTTTTCTTTGAAGTTTGGTCAAGTTTTTTCAGNTCTTTTTTTTCTATTAATCCTGATAA
GTTGAGACTTCCTTTGAAATTGAGGAATTGCATATAAGATCTCTGTAAGAACTGAACTAGCTCTGTGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8761.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis