Browse Element(s) Details


Os.48276.1.S1_at

Description gb:CR280281
DB_XREF= gi:44666847
DB_XREF=CR280281
CLONE=p747e12p3
TID=Os.48276.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.34 (P0458E05.34), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7364011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48276.1.S1_at--282--4191Chr01:42988048..42988072 (25 bp)
CCCTCGTGAGATTCCTTGATTACAT
LOC_Os01g73640
Os.48276.1.S1_at--1051--5791Chr01:42988091..42988115 (25 bp)
GACGCTACAGAGGTATCCGTTGGAT
LOC_Os01g73640
Os.48276.1.S1_at--643--2651Chr01:42988277..42988301 (25 bp)
AAGCCACCCATCTGGTTACGATGAT
LOC_Os01g73640
Os.48276.1.S1_at--900--5551Chr01:42988304..42988328 (25 bp)
GAAACCATATCACTACCTAAAGCTG
LOC_Os01g73640
Os.48276.1.S1_at--662--371Chr01:42988341..42988365 (25 bp)
ATCAAGCATTGGTGGCTATTGCCAG
LOC_Os01g73640
Os.48276.1.S1_at--287--2691Chr01:42988523..42988547 (25 bp)
AAGCTTTACGAGACATTCGGTTGAT
LOC_Os01g73640
Os.48276.1.S1_at--622--4971Chr01:42989208..42989232 (25 bp)
GCATGTTTTTACTCCAGTGCAGCAT
LOC_Os01g73640
Os.48276.1.S1_at--374--1131Chr01:42989223..42989247 (25 bp)
AGTGCAGCATCTGAGTCGCCCTCTT
LOC_Os01g73640
Os.48276.1.S1_at--651--10831Chr01:42989258..42989282 (25 bp)
TTGTGGTCCCATCTGTCTTGAACAG
LOC_Os01g73640
Os.48276.1.S1_at--512--6771Chr01:42989296..42989320 (25 bp)
GTTACTCCAGACCAGGATGTTCGAC
LOC_Os01g73640
Os.48276.1.S1_at--902--3591Chr01:42989340..42989364 (25 bp)
CTTGTTAGTAACACCTTGCTTTAGT
LOC_Os01g73640
Target Sequence 
CCCTCGTGAGATTCCTTGATTACATTGCAGAGGGCAATGTGAAGACGCTACAGAGGTATCCGTTGGATTGGGATGNNANN
NAGNNGNNNNNNNNNNNNTNNNNGGNNNNNTNNNNNNNCCCNCNTNAGGAGATGATAAGTTATGACCAAACAAGAAGCCA
CCCATCTGGTTACGATGATAAGAAACCATATCACTACCTAAAGCTGTGCAAAAATATAATCAAGCATTGGTGGCTATTGC
CAGAAAGTGTTAAGGNNGNNNNNNNAANNTGNCAAAGGCTCATCCAAAAAATGGAAACATGGGATCCTAAGATATGGTGT
AAGCTTTACGAGACATTCGGTTGATCAAGCAGGAAGGCAAACGAAGCTGACGATGGGATAGGCATATAGCATGTTTTTAC
TCCAGTGCAGCATCTGAGTCGCCCTCTTCTTTCTTTCTTTGTGGTCCCATCTGTCTTGAACAGCCAGTTATGTAATGTTA
CTCCAGACCAGGATGTTCGACCTTCTGAATCTGTGTTCTTCTTGTTAGTAACACCTTGCTTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis