Browse Element(s) Details


Os.11387.1.S1_a_at

Description gb:AB154521.1
DB_XREF= gi:40217606
GEN=OsCIN4
TID=Os.11387.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.11387 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsCIN4 mRNA for cell wall invertase, complete cds.
PROD=cell wall invertase
FL= gb:AK067444.1 gb:AK061744.1 gb:AB154521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7358011/11Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11387.1.S1_a_at--444--10511Chr01:42956329..42956353 (25 bp)
TTCAGGGTTTACAAATCAGAGCAGA
LOC_Os01g73580
Os.11387.1.S1_a_at--1132--1451Chr01:42956351..42956375 (25 bp)
AGAAGTACATGGTTCTCCTGTGCTC
LOC_Os01g73580
Os.11387.1.S1_a_at--943--6711Chr01:42956362..42956386 (25 bp)
GTTCTCCTGTGCTCTGATCTGAGAA
LOC_Os01g73580
Os.11387.1.S1_a_at--518--6432Chr01:42956596..42956620 (25 bp)
GATCATCGTTGAGACCAGGACTGTA
LOC_Os01g73580
Os.11387.1.S1_a_at--176--1392Chr01:42956607..42956631 (25 bp)
AGACCAGGACTGTACACACCAGCAT
LOC_Os01g73580
Os.11387.1.S1_a_at--1053--2152Chr01:42956622..42956646 (25 bp)
ACACCAGCATATGGAGGCTTCTTTG
LOC_Os01g73580
Os.11387.1.S1_a_at--788--8292Chr01:42956637..42956661 (25 bp)
GGCTTCTTTGAATATGACCTTGAAA
LOC_Os01g73580
Os.11387.1.S1_a_at--657--411Chr01:42956844..42956868 (25 bp)
ATCATGGCCAGAGTGTACCCGGCGG
LOC_Os01g73580
Os.11387.1.S1_a_at--488--6991Chr01:42956894..42956918 (25 bp)
GTACGCCTTCAACAATGGCAGTAGC
LOC_Os01g73580
Os.11387.1.S1_a_at--319--10011Chr01:42956915..42956939 (25 bp)
TAGCACGGTGAAGGTGTCGCAGCTC
LOC_Os01g73580
Os.11387.1.S1_a_at--526--1871Chr01:42956955..42956979 (25 bp)
ACGAGAGCACAGGTCAATGTCAGGA
LOC_Os01g73580
Target Sequence 
TTCAGGGTTTACAAATCAGAGCAGAAGTACATGGTTCTCCTGTGCTCTGATCTGAGAAGATCATCGTTGAGACCAGGACT
GTACACACCAGCATATGGAGGCTTCTTTGAATATGACCTTGAAAAGGAGAAGAAGATCTCCTTGAGAACTCTGATCGACC
GGTCGGCGGTGGAGAGCTTCGGCGGCGGCGGCAGGGCGTGCATCATGGCCAGAGTGTACCCGGCGGCGGTCGTCGACGGC
GCCACCCACATGTACGCCTTCAACAATGGCAGTAGCACGGTGAAGGTGTCGCAGCTCAAGGCATGGAGCATGACGAGAGC
ACAGGTCAATGTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11387.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis