Browse Element(s) Details


Os.12130.1.S1_at

Description gb:AK073175.1
DB_XREF= gi:32983198
TID=Os.12130.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mitochondrial processing peptidase alpha subunit, mitochondrial precursor (Alpha-MPP) (P0458E05.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023J10, full insert sequence.
FL= gb:AK073175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7355011/11mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0005759cellular_componentmitochondrial matrix
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12130.1.S1_at--831--2371Chr01:42944344..42944368 (25 bp)
AAACTCAACAATTTCTGCCGTGCTG
LOC_Os01g73550
Os.12130.1.S1_at--36--6331Chr01:42944368..42944392 (25 bp)
GATGAATCTTGAATCCAGGGTAATT
LOC_Os01g73550
Os.12130.1.S1_at--375--5011Chr01:42944632..42944655 (24 bp)
GCAGGAAGCCTGTTGACCATTTTCT
LOC_Os01g73550
Os.12130.1.S1_at--738--10511Chr01:42944716..42944740 (25 bp)
TTCACCACCCACAATGGCTAGTTGG
LOC_Os01g73550
Os.12130.1.S1_at--456--6032Chr01:42944742..42944849 (25 bp)
GAGATGTTGATAAAGTTCCTCCATA
LOC_Os01g73550
Os.12130.1.S1_at--943--6151Chr01:42944865..42944889 (25 bp)
GAGGTTTTGAAGTTCTCCGACACAA
LOC_Os01g73550
Os.12130.1.S1_at--1040--8812Chr01:42944929..42944953 (25 bp)
TGTTGTATAATCCAATTCTCGCTAT
LOC_Os01g73550
Os.12130.1.S1_at--28--5611Chr01:42944971..42944995 (25 bp)
GAAATTGCCCTCGTTATACACATCA
LOC_Os01g73550
Os.12130.1.S1_at--414--10151Chr01:42945038..42945062 (25 bp)
TATCTTGTGAAAGTCCAGGTCAAAC
LOC_Os01g73550
Os.12130.1.S1_at--1143--5371Chr01:42945090..42945114 (25 bp)
GAAGCAAGTTTAGCGATTCCTCGTC
LOC_Os01g73550
Os.12130.1.S1_at--171--4811Chr01:42945154..42945178 (25 bp)
GCTCTGTAAACAATTTTCACGGCGA
LOC_Os01g73550
Target Sequence 
AAACTCAACAATTTCTGCCGTGCTGATGAATCTTGAATCCAGGGTAATTGTTGCAGAAGATATAGGGAGGCAGATATTGA
CTTATGGTTGCAGGAAGCCTGTTGACCATTTTCTTCAATGTATGGACGAAATGACTCTAGATGATATAACAGCTTTTGCC
AAGAAGATGTTGTCTTCACCACCCACAATGGCTAGTTGGGGAGATGTTGATAAAGTTCCTCCATATGAATTTGTNTGCNA
GAGGTTTTGAAGTTCTCCGACACAATGATCNGTGGTGGACATGAAGATGGGATTTTGTTTACNATGTTGTATAATCCAAT
TCTCGCTATATTTGGGCCTTATCTTAGAAATTGCCCTCGTTATACACATCACCTGATGAGATTAGATTTTTGCTATCATC
TTCAAACAGCATATATCTTGTGAAAGTCCAGGTCAAACGGAGGTGAAAGTTTTGCNATATCTCTCGAAGCAAGTTTAGCG
ATTCCTCGTCTTGTTATGCAAACATGNATATGCACTTGTCTTATTGNGTGCTCTGTAAACAATTTTCACGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis