Browse Element(s) Details


Os.5947.1.S1_at

Description gb:AK073409.1
DB_XREF= gi:32983432
TID=Os.5947.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042I24, full insert sequence.
FL= gb:AK073409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7347011/11Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5947.1.S1_at--574--5372Chr09:15346261..15346283 (22 bp)
GAAGACATCTGCAAGAACAGCACAA
NONE
Os.5947.1.S1_at--229--5131Chr01:42902173..42902197 (25 bp)
GCACAAAGGCTGATTGCTCATGGAA
LOC_Os01g73470
Os.5947.1.S1_at--101--8271Chr01:42902139..42902163 (25 bp)
GGCAGTTTACAAACTTCGGGTCAGA
LOC_Os01g73470
Os.5947.1.S1_at--814--6171Chr01:42902087..42902111 (25 bp)
GAGGAGTCGAATCGCTGCTCGACAA
LOC_Os01g73470
Os.5947.1.S1_at--143--9111Chr01:42902072..42902096 (25 bp)
TGCTCGACAAGCTTTGCGGGACGAC
LOC_Os01g73470
Os.5947.1.S1_at--557--7891Chr01:42902041..42902065 (25 bp)
GGTTCAGATTGACTGATTCGCCGCC
LOC_Os01g73470
Os.5947.1.S1_at--1125--6551Chr01:42902035..42902059 (25 bp)
GATTGACTGATTCGCCGCCTTCATG
LOC_Os01g73470
Os.5947.1.S1_at--883--3631Chr01:42902017..42902041 (25 bp)
CTTCATGGATCATCGCCTCTAGCAG
LOC_Os01g73470
Os.5947.1.S1_at--327--8571Chr01:42902012..42902036 (25 bp)
TGGATCATCGCCTCTAGCAGCCAGG
LOC_Os01g73470
Os.5947.1.S1_at--529--3491Chr01:42901980..42902004 (25 bp)
CAGGCCTGGTGCCATTTTGTGTGAC
LOC_Os01g73470
Os.5947.1.S1_at--1019--7271Chr01:42901972..42901996 (25 bp)
GTGCCATTTTGTGTGACCTGTGGCT
LOC_Os01g73470
Target Sequence 
GAAGACATCTGCAAGAACAGCACAAAGGCTGATTGCTCATGGAATGGGGCTAAGGCAGTTTACAAACTTCGGGTCAGANG
AGCTGAAGAAACAAGAGGAGGCGAGGAGGAGTCGAATCGCTGCTCGACAAGCTTTGCGGGACGACGCATGGGGTTCAGAT
TGACTGATTCGCCGCCTTCATGGATCATCGCCTCTAGCAGCCAGGCTGCTCCCAGGCCTGGTGCCATTTTGTGTGACCTG
TGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis