Browse Element(s) Details


Os.26985.1.S1_at

Description gb:CB631594
DB_XREF= gi:29626583
DB_XREF=OSIIEb09D12.r
CLONE=OSIIEb09D12
TID=Os.26985.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.26985 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.13 (P0458E05.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g734609/11PHD finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73410Os.31375.1.S2_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73410Os.31375.1.S1_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73420Os.6110.1.S1_at11/111+42874549..42875838Mitochondrial carrier protein, expressed
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26985.1.S1_at--251--6011Chr01:42899385..42899409 (25 bp)
GAGAGCCATGTCTTGTTGGTTGCCT
LOC_Os01g73460
Os.26985.1.S1_at--1142--10691Chr01:42899404..42899428 (25 bp)
TTGCCTGCCGTGATATAGCTTGTGG
LOC_Os01g73460
Os.26985.1.S1_at--182--6991Chr01:42899468..42899492 (25 bp)
GTACCCAACTCATCATTTTGTCTAA
LOC_Os01g73460
Os.26985.1.S1_at--47--10051NONE
TAGTCCTAGTTTTGTTACCTGCCCA
NONE
Os.26985.1.S1_at--587--10791Chr01:42899505..42899529 (25 bp)
TTGTTACCTGCCCAGCATTAAGGAC
LOC_Os01g73460
Os.26985.1.S1_at--641--5951Chr01:42899688..42899712 (25 bp)
GAGCAATCTTCTCAGCTGTTGGGAC
LOC_Os01g73460
Os.26985.1.S1_at--313--3071Chr01:42899719..42899743 (25 bp)
AATCTTCATTTTTCCTGGTCTCCAA
LOC_Os01g73460
Os.26985.1.S1_at--84--10371Chr01:42899767..42899791 (25 bp)
TTTTATTTATTCTGGAGCTTCCTGC
LOC_Os01g73460
Os.26985.1.S1_at--714--1551Chr01:42899782..42899806 (25 bp)
AGCTTCCTGCTCAAATTCTCTTCTT
LOC_Os01g73460
Os.26985.1.S1_at--901--7931Chr01:42899812..42899836 (25 bp)
GGATTTTCATCCCTTTATGTGGGAG
LOC_Os01g73460
Os.26985.1.S1_at--579--271NONE
ATATGTGTCTTTGTCTCTATTTAAA
NONE
Target Sequence 
GAGAGCCATGTCTTGTTGGTTGCCTGCCGTGATATAGCTTGTGGTGAGAAGCTATATTATGATTACAATGGATATGAGCA
TGAGTACCCAACTCATCATTTTGTCTAACTTAGTCCTAGTTTTGTTACCTGCCCAGCATTAAGGACCCTGGGCAAGTGTA
GGGCTTAATGGCAACATTTTCAGCATTGCCACCAAAATCCAATAATTTATAACATATATCTTTGGTACAAATGAAAAGTT
AAAACCAATTTTCAGAAGCAGCCCTGAATGACAAAAATGTAGGTGCTGGTGATATTAGGAGTGAGAGCAATCTTCTCAGC
TGTTGGGACAAGAGGAATCTTCATTTTTCCTGGTCTCCAAGATGCAATCTTCTCATTGATATTTTTTATTTATTCTGGAG
CTTCCTGCTCAAATTCTCTTCTTTTTTAGGGATTTTCATCCCTTTATGTGGGAGTAAATATGTGTCTTTGTCTCTATTTA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis