Browse Element(s) Details


OsAffx.21315.1.S1_at

Description gb:NM_192988.1
DB_XREF= gi:34913059
GEN=P0013G02.22
TID=OsAffx.21315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0013G02.22 (P0013G02.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g023101/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02250NANA4+769338..772899retrotransposon protein, putative, unclassified
LOC_Os04g02264OsAffx.28472.1.S1_x_at11/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264Os.8747.3.S1_x_at2/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264Os.50810.2.S1_at1/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264OsAffx.31730.1.S1_x_at1/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02280Os.50810.2.S1_at11/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280Os.50810.1.S1_x_at11/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280OsAffx.28472.1.S1_x_at10/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280OsAffx.31730.1.S1_x_at1/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02300OsAffx.3903.1.S1_at1/114+790445..794050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02310OsAffx.21315.1.S1_at1/114+795536..802082retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02320NANA4+803276..804712retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02330OsAffx.10633.1.S1_at7/114+805173..807551retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02340Os.40855.4.S1_x_at7/114+811462..813563hypothetical protein
LOC_Os04g02340Os.40855.2.S1_x_at7/114+811462..813563hypothetical protein
LOC_Os04g02340Os.40360.1.S1_x_at1/114+811462..813563hypothetical protein
LOC_Os04g02350Os.35344.3.S1_x_at10/114+818752..824644transposon protein, putative, Mutator sub-class
LOC_Os04g02350Os.35344.18.S1_x_at9/114+818752..824644transposon protein, putative, Mutator sub-class
LOC_Os04g02350OsAffx.22940.5.S1_x_at3/114+818752..824644transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21315.1.S1_at--844--133Chr01:22752260..22752298 (25 bp)
ATTAACAATGTGTGGTTCTTATATA
NONE
OsAffx.21315.1.S1_at--969--951Chr01:22753473..22753497 (25 bp)
AGGACTTGAGGGACAGAGACTGAAC
NONE
OsAffx.21315.1.S1_at--618--5651Chr01:22753484..22753508 (25 bp)
GACAGAGACTGAACGGAGCTGAGAC
NONE
OsAffx.21315.1.S1_at--948--5451Chr01:22753494..22753518 (25 bp)
GAACGGAGCTGAGACAGACCATCAT
NONE
OsAffx.21315.1.S1_at--388--4751Chr01:22753501..22753525 (25 bp)
GCTGAGACAGACCATCATGAATTCA
NONE
OsAffx.21315.1.S1_at--164--671Chr01:22753517..22753541 (25 bp)
ATGAATTCATGGTCATCCACGCCAA
NONE
OsAffx.21315.1.S1_at--240--9611Chr01:22753529..22753553 (25 bp)
TCATCCACGCCAACCGAATCTTTAA
NONE
OsAffx.21315.1.S1_at--784--3351Chr01:22753534..22753558 (25 bp)
CACGCCAACCGAATCTTTAAACTTG
NONE
OsAffx.21315.1.S1_at--777--10271Chr01:22753550..22753574 (25 bp)
TTAAACTTGAAAGCGAACCATTCTT
NONE
OsAffx.21315.1.S1_at--693--2651Chr01:22753560..22753584 (25 bp)
AAGCGAACCATTCTTTCCAATAACG
NONE
OsAffx.21315.1.S1_at--673--3571Chr01:22753568..22753592 (25 bp)
CATTCTTTCCAATAACGTACTCCGG
NONE
Target Sequence 
ATTAACAATGTGTGGTTCTTATATAAGTCCTCGCGAAGGAGGCAAATATATGCCGCGAAGGGCAAATGTGATATTTACCG
AGGCGCAGGACTTGAGGGACAGAGACTGAACGGAGCTGAGACAGACCATCATGAATTCATGGTCATCCACGCCAACCGAA
TCTTTAAACTTGAAAGCGAACCATTCTTTCCAATAACGTACTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis