Browse Element(s) Details


Os.27680.1.S1_at

Description gb:AK067011.1
DB_XREF= gi:32977029
TID=Os.27680.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093K20, full insert sequence.
FL= gb:AK067011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3430011/11TMS membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g34240NANA3+19450461..19453301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34250NANA3+19453712..19455966retrotransposon protein, putative, unclassified
LOC_Os03g34260Os.1709.1.S1_x_at6/113+19458427..19460569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34270OsAffx.13843.1.S1_at1/113+19461429..19464738hypothetical protein
LOC_Os03g34280Os.36351.1.S1_at10/113+19466301..19470237expressed protein
LOC_Os03g34290OsAffx.13185.1.S1_at11/113+19471133..19472273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34300Os.27680.1.S1_at11/113+19473524..19480531TMS membrane family protein, putative, expressed
LOC_Os03g34310Os.22470.2.S1_x_at11/113+19482712..19486344expressed protein
LOC_Os03g34310Os.22470.1.A1_at11/113+19482712..19486344expressed protein
LOC_Os03g34320OsAffx.28472.1.S1_x_at11/113+19490053..19492213hypothetical protein
LOC_Os03g34320Os.50810.2.S1_at1/113+19490053..19492213hypothetical protein
LOC_Os03g35326NANA3+19499126..19503727retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27680.1.S1_at--365--2211Chr03:19474170..19474194 (25 bp)
ACAACTGTTCTCTCTGTCGTGTACT
LOC_Os03g34300
Os.27680.1.S1_at--680--7191Chr03:19474155..19474179 (25 bp)
GTCGTGTACTCTGCTGTTCGTGCTG
LOC_Os03g34300
Os.27680.1.S1_at--70--7051Chr03:19473952..19473976 (25 bp)
GTAAAGAAATTGATGCGCGCCCCGT
LOC_Os03g34300
Os.27680.1.S1_at--1106--4131Chr03:19473935..19473959 (25 bp)
CGCCCCGTGAGCTATTCATATACAT
LOC_Os03g34300
Os.27680.1.S1_at--148--10331Chr03:19473908..19473932 (25 bp)
TTTCACGTTATCTTTGCTCTTGCAA
LOC_Os03g34300
Os.27680.1.S1_at--48--751Chr03:19473881..19473905 (25 bp)
ATGTATTCAGCCATGCTTCTGACTG
LOC_Os03g34300
Os.27680.1.S1_at--782--5731Chr03:19473861..19473885 (25 bp)
GACTGGCTGGACGAGCGCTGCTTCA
LOC_Os03g34300
Os.27680.1.S1_at--241--8151Chr03:19473808..19473832 (25 bp)
GGACAACTGTTTGGGTTCGCATCTG
LOC_Os03g34300
Os.27680.1.S1_at--257--6711Chr03:19473794..19473818 (25 bp)
GTTCGCATCTGCACTGAGTGGGCTA
LOC_Os03g34300
Os.27680.1.S1_at--489--9931Chr03:19473771..19473795 (25 bp)
TACGGCTGCATTGTACATCTGGACC
LOC_Os03g34300
Os.27680.1.S1_at--66--4871Chr03:19473732..19473756 (25 bp)
GCTATTTCCAGACCGGGACTTCTCA
LOC_Os03g34300
Target Sequence 
ACAACTGTTCTCTCTGTCGTGTACTCTGCTGTTCGTGCTGGATCTTCCACTACATTTCTTTCGCCACCATCATCTCCTAG
ATCTGGAATCAAGAATCCTTTACTTGGTGATGATAACGTGGAGGCGGGGAAAAGCAACAGTAAAGAAATTGATGCGCGCC
CCGTGAGCTATTCATATACATTTTTTCACGTTATCTTTGCTCTTGCAAGTATGTATTCAGCCATGCTTCTGACTGGCTGG
ACGAGCGCTGCTTCAGACAGCTCGGAGCTGATGGATGTTGGATGGACAACTGTTTGGGTTCGCATCTGCACTGAGTGGGC
TACGGCTGCATTGTACATCTGGACCCTTGTTGCTCCCCTGCTATTTCCAGACCGGGACTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis