Browse Element(s) Details


Os.22470.2.S1_x_at

Description gb:AK062050.1
DB_XREF= gi:32972068
TID=Os.22470.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B03, full insert sequence.
FL= gb:AK062050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3431011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g34260Os.1709.1.S1_x_at6/113+19458427..19460569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34270OsAffx.13843.1.S1_at1/113+19461429..19464738hypothetical protein
LOC_Os03g34280Os.36351.1.S1_at10/113+19466301..19470237expressed protein
LOC_Os03g34290OsAffx.13185.1.S1_at11/113+19471133..19472273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34300Os.27680.1.S1_at11/113+19473524..19480531TMS membrane family protein, putative, expressed
LOC_Os03g34310Os.22470.2.S1_x_at11/113+19482712..19486344expressed protein
LOC_Os03g34310Os.22470.1.A1_at11/113+19482712..19486344expressed protein
LOC_Os03g34320OsAffx.28472.1.S1_x_at11/113+19490053..19492213hypothetical protein
LOC_Os03g34320Os.50810.2.S1_at1/113+19490053..19492213hypothetical protein
LOC_Os03g35326NANA3+19499126..19503727retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22470.2.S1_x_at--773--7171Chr03:19485960..19485984 (25 bp)
GTGAGGTTTTGCTTCCATAGGTTGA
LOC_Os03g34310
Os.22470.2.S1_x_at--490--7371Chr03:19486017..19486041 (25 bp)
GTGACATCCATGTTTTGGCTTCATT
LOC_Os03g34310
Os.22470.2.S1_x_at--477--5911Chr03:19486077..19486101 (25 bp)
GAGCTCATGATGTCACAGTTTTACG
LOC_Os03g34310
Os.22470.2.S1_x_at--663--6811Chr03:19486094..19486118 (25 bp)
GTTTTACGTACTTCTTTGTGTCACA
LOC_Os03g34310
Os.22470.2.S1_x_at--353--3851Chr03:19486128..19486152 (25 bp)
CTGACGTCTCAATATTTTCTTGCGA
LOC_Os03g34310
Os.22470.2.S1_x_at--810--10311Chr03:19486143..19486167 (25 bp)
TTTCTTGCGAACGAAGCTGACCTCT
LOC_Os03g34310
Os.22470.2.S1_x_at--899--5391Chr03:19486155..19486179 (25 bp)
GAAGCTGACCTCTTAGGCAATAGTT
LOC_Os03g34310
Os.22470.2.S1_x_at--223--1951Chr03:19486190..19486214 (25 bp)
ACTGTGAATACATCCGTCCAATTCC
LOC_Os03g34310
Os.22470.2.S1_x_at--926--3151Chr03:19486209..19486233 (25 bp)
AATTCCTCTTCAAATTGGGCTCGAT
LOC_Os03g34310
Os.22470.2.S1_x_at--1093--8631Chr03:19486224..19486248 (25 bp)
TGGGCTCGATTGCAATAGTTGTTTT
LOC_Os03g34310
Os.22470.2.S1_x_at--756--9591Chr03:19486259..19486283 (25 bp)
TCATTTGAACTGATGTTGTGCTCTG
LOC_Os03g34310
Target Sequence 
GTGAGGTTTTGCTTCCATAGGTTGATGGCTTGGTGATTGAGGATGCAGTAATTTGTAGTGACATCCATGTTTTGGCTTCA
TTAATTAGGAGGAACCAAAGCTGCAAAGGAGGTTTTTGAGCTCATGATGTCACAGTTTTACGTACTTCTTTGTGTCACAG
TTGTCAAACTGACGTCTCAATATTTTCTTGCGAACGAAGCTGACCTCTTAGGCAATAGTTTTTTTCCCTTACTGTGAATA
CATCCGTCCAATTCCTCTTCAAATTGGGCTCGATTGCAATAGTTGTTTTTTACATGAATTCATTTGAACTGATGTTGTGC
TCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22470.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis