Browse Element(s) Details


OsAffx.23345.1.S1_at

Description tigr:9629.m02200
TID=OsAffx.23345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2288011/11expressed protein
LOC_Os06g261802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22840OsAffx.22699.1.S1_x_at1/111+12814483..12817808retrotransposon protein, putative, unclassified
LOC_Os01g22840OsAffx.8201.1.S1_x_at1/111+12814483..12817808retrotransposon protein, putative, unclassified
LOC_Os01g22850NANA1+12821196..12822804retrotransposon protein, putative, unclassified
LOC_Os01g22860NANA1+12827227..12827829retrotransposon protein, putative, unclassified
LOC_Os01g22870Os.24743.1.S1_at11/111+12831404..12835879FAM18-like protein At1g09330, putative, expressed
LOC_Os01g22880OsAffx.23345.1.S1_at11/111+12841118..12841849expressed protein
LOC_Os01g22880OsAffx.28650.1.S1_x_at1/111+12841118..12841849expressed protein
LOC_Os01g22890OsAffx.19542.3.S1_x_at6/111+12844210..12848432retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23345.1.S1_at--19--9252Chr12:17941997..17942021 (25 bp)
TCCTTCTGGCCTTCGGGCTGTCAAA
NONE
OsAffx.23345.1.S1_at--477--5552Chr09:14254685..14254709 (25 bp)
GAAACGATTCAAAGACCATCTGAGG
NONE
OsAffx.23345.1.S1_at--463--3551Chr01:12841717..12841741 (25 bp)
CATCTGAGGATGCTACATGTGCGAG
LOC_Os01g22880
OsAffx.23345.1.S1_at--877--9871Chr01:12841704..12841728 (25 bp)
TACATGTGCGAGGAATTGTGCCGAA
LOC_Os01g22880
OsAffx.23345.1.S1_at--245--3171Chr01:12841691..12841715 (25 bp)
AATTGTGCCGAAGCTCACTCGGGAG
LOC_Os01g22880
OsAffx.23345.1.S1_at--976--2833Chr05:327516..327540 (25 bp)
AAGTAGTTCACGTTCCCATGGATAA
NONE
OsAffx.23345.1.S1_at--99--2292Chr12:17941595..17941619 (25 bp)
AAATGCGACGAAGCTCACCAGAGGT
NONE
OsAffx.23345.1.S1_at--38--5413Chr12:17941586..17941610 (25 bp)
GAAGCTCACCAGAGGTCTCTAAGAT
NONE
OsAffx.23345.1.S1_at--1083--6593Chr05:327571..327594 (24 bp)
GATTGGATCAAACACCTTCGGGCAG
NONE
OsAffx.23345.1.S1_at--994--9871Chr01:12841266..12841290 (25 bp)
TACGTCCGACCGTGTCAAAAAACAG
LOC_Os01g22880
OsAffx.23345.1.S1_at--1073--8391Chr01:12841200..12841224 (25 bp)
GGCGCGGTGTTCATCAACAAATATC
LOC_Os01g22880
Target Sequence 
TCCTTCTGGCCTTCGGGCTGTCAAAGGGAGGAGGGAAACGATTCAAAGACCATCTGAGGATGCTACATGTGCGAGGAATT
GTGCCGAAGCTCACTCGGGAGCGAGGAATCGAAGGAATGAGCCGGCGGCCGGACTTGAGGAAGAAAGATCAGGTAGAGGA
AGTAGTTCACGTTCCCATGGATAAAATGCGACGAAGCTCACCAGAGGTCTCTAAGATTGGATCAAACACCTTCGGGCAGA
GAAATGAGGAGGGTGTTCTTGGAGATAAGGCGCAGGGGTATTTACGTCCGACCGTGTCAAAAAACAGCCTCTCGTCTGCC
ACGTCAGCACGTCAAGTGGAGAGGAGACGGCGCGGTGTTCATCAACAAATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis