Browse Element(s) Details


Os.24743.1.S1_at

Description gb:AK121761.1
DB_XREF= gi:37991384
TID=Os.24743.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090D14, full insert sequence.
FL= gb:AK121761.1 gb:AK064784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2287011/11FAM18-like protein At1g09330, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22830OsAffx.2494.1.S1_at1/111+12809770..12813455retrotransposon protein, putative, unclassified
LOC_Os01g22840OsAffx.22699.1.S1_x_at1/111+12814483..12817808retrotransposon protein, putative, unclassified
LOC_Os01g22840OsAffx.8201.1.S1_x_at1/111+12814483..12817808retrotransposon protein, putative, unclassified
LOC_Os01g22850NANA1+12821196..12822804retrotransposon protein, putative, unclassified
LOC_Os01g22860NANA1+12827227..12827829retrotransposon protein, putative, unclassified
LOC_Os01g22870Os.24743.1.S1_at11/111+12831404..12835879FAM18-like protein At1g09330, putative, expressed
LOC_Os01g22880OsAffx.23345.1.S1_at11/111+12841118..12841849expressed protein
LOC_Os01g22880OsAffx.28650.1.S1_x_at1/111+12841118..12841849expressed protein
LOC_Os01g22890OsAffx.19542.3.S1_x_at6/111+12844210..12848432retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24743.1.S1_at--1074--31Chr01:12834640..12834664 (25 bp)
ATTGTTCTTGGGATATTCTCACTCA
LOC_Os01g22870
Os.24743.1.S1_at--304--1411Chr01:12834667..12834691 (25 bp)
AGACTTCATGCTGATTACCTTCTTG
LOC_Os01g22870
Os.24743.1.S1_at--809--10851Chr01:12834695..12834719 (25 bp)
TTGGAGTTTGCTTGAGTCTCAGCAT
LOC_Os01g22870
Os.24743.1.S1_at--21--6111Chr01:12834708..12834732 (25 bp)
GAGTCTCAGCATAGCAAACATTGTT
LOC_Os01g22870
Os.24743.1.S1_at--387--10731Chr01:12835418..12835442 (25 bp)
TTGCAGATTGGACTAGAACTACGCT
LOC_Os01g22870
Os.24743.1.S1_at--871--1431Chr01:12835432..12835456 (25 bp)
AGAACTACGCTCCTATCATCTGGTG
LOC_Os01g22870
Os.24743.1.S1_at--416--9611Chr01:12835447..12835471 (25 bp)
TCATCTGGTGTCAGGTCAACAATTC
LOC_Os01g22870
Os.24743.1.S1_at--286--7751Chr01:12835483..12835507 (25 bp)
GGTGTCTAAATAGAGGCGCCCTAAT
LOC_Os01g22870
Os.24743.1.S1_at--157--10251Chr01:12835556..12835580 (25 bp)
TTTGTTTACTTTGCCTAGTTGCTTA
LOC_Os01g22870
Os.24743.1.S1_at--300--10411Chr01:12835578..12835602 (25 bp)
TTATTGACCCTATACATCTTTGTGT
LOC_Os01g22870
Os.24743.1.S1_at--972--10171Chr01:12835588..12835612 (25 bp)
TATACATCTTTGTGTCCCCTGATAT
LOC_Os01g22870
Target Sequence 
ATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTGATTACCTTCTTGTTGTTGGAGTTTGCTTGAGTCTCAGCAT
AGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTAT
CATCTGGTGTCAGGTCAACAATTCAGTCAGCATTCGGTGTCTAAATAGAGGCGCCCTAATGTCACATACAGTGGTGTGCA
ATTTATGAATCAGATGATGCATTCTGCTTTTGTTTACTTTGCCTAGTTGCTTATTGACCCTATACATCTTTGTGTCCCCT
GATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis