Browse Element(s) Details


OsAffx.23722.3.S1_x_at

Description tigr:9629.m02204
TID=OsAffx.23722.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2291010/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22870Os.24743.1.S1_at11/111+12831404..12835879FAM18-like protein At1g09330, putative, expressed
LOC_Os01g22880OsAffx.23345.1.S1_at11/111+12841118..12841849expressed protein
LOC_Os01g22880OsAffx.28650.1.S1_x_at1/111+12841118..12841849expressed protein
LOC_Os01g22890OsAffx.19542.3.S1_x_at6/111+12844210..12848432retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g22920OsAffx.23722.5.S1_s_at11/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22920OsAffx.23722.5.S1_at9/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22930OsAffx.10665.3.S1_x_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.3.S1_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.1.S1_x_at2/111+12872967..12873994hypothetical protein
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23722.3.S1_x_at--1034--2091Chr01:12859462..12859486 (25 bp)
ACATCCCTGACAAGGCTCATCACAG
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--1031--5611Chr01:12859432..12859456 (25 bp)
GACAACGACTCCCTCATCAGGATCA
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--589--411Chr01:12859417..12859441 (25 bp)
ATCAGGATCAATCACTACCCTCCAT
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--274--3931Chr01:12859338..12859362 (25 bp)
CGGCCATCGGGTTCGGCGAGCACAC
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--507--1291Chr01:12859305..12859329 (25 bp)
AGATCCTCAGCGTCCTGCGTGCCAA
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--657--6731Chr01:12859193..12859217 (25 bp)
GTTCTTCGTCAACGTCGGTGATCTC
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--108--7411NONE
GTGATCTCCTTCAGGCTTTGACAAA
NONE
OsAffx.23722.3.S1_x_at--276--5171Chr01:12858187..12858211 (25 bp)
GCAAGCCGAGGCTGTCGACCATCTA
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--698--7951Chr01:12858136..12858160 (25 bp)
GGATCTCGGCTCTCCCGGAGACGGT
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--589--1071Chr01:12858086..12858110 (25 bp)
AGGGCCTTCACCTGGGCGGAGTACA
LOC_Os01g22910
OsAffx.23722.3.S1_x_at--176--2211Chr01:12858064..12858088 (25 bp)
ACAAGAGGACCATGTACACGCTCCG
LOC_Os01g22910
Target Sequence 
ACATCCCTGACAAGGCTCATCACAGCCACTGACAACGACTCCCTCATCAGGATCAATCACTACCCTCCATCCTGCGCCGC
CGCCGCCGGCGACCACAAGTCCGGCGGCGGCCCGGCGCCGACGGCGGCCATCGGGTTCGGCGAGCACACCGACCCTCAGA
TCCTCAGCGTCCTGCGTGCCAACGACGCCGACGGCCTGCAGCTGCTTCTGCCGGACGCCGCCGCCGCCGGCGACAGCGTC
TGGGTCCCCGTGCCGCCCGACCCGTCCGCGTTCTTCGTCAACGTCGGTGATCTCCTTCAGGCTTTGACAAACGGGAGGCT
GGTGAGTATCCGGCACAGGGTGGTGGTCGGCACCGGCAAGCCGAGGCTGTCGACCATCTACTTCGCGGCGCCGCCGCTGC
ACGCCAGGATCTCGGCTCTCCCGGAGACGGTGGCCGCCGGCGCGCCGCGCCGGTACAGGGCCTTCACCTGGGCGGAGTAC
AAGAGGACCATGTACACGCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23722.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis