Browse Element(s) Details


OsAffx.1775.1.S1_x_at

Description gb:NM_183878.1
DB_XREF= gi:34894883
GEN=B1140D12.4
TID=OsAffx.1775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative serine carboxypeptidase II-like protein (B1140D12.4), mRNA.
PROD=putative serine carboxypeptidase II-likeprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2295411/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g22920OsAffx.23722.5.S1_s_at11/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22920OsAffx.23722.5.S1_at9/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22930OsAffx.10665.3.S1_x_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.3.S1_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.1.S1_x_at2/111+12872967..12873994hypothetical protein
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed
LOC_Os01g22990OsAffx.22867.1.S1_x_at11/111+12903980..12907269expressed protein
LOC_Os01g22990Os.7786.1.S1_at11/111+12903980..12907269expressed protein
LOC_Os01g23000OsAffx.23347.1.S1_s_at11/111+12914892..12916022hypothetical protein
LOC_Os01g23000OsAffx.23347.1.S1_at1/111+12914892..12916022hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1775.1.S1_x_at--93--6251Chr01:12879590..12879703 (25 bp)
GATGGTTTTGTAGCCGAGGACGCAT
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--90--791Chr01:12880374..12880398 (25 bp)
ATGTGATATCTCATATGCGGTAGTA
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--960--1291Chr01:12880403..12880427 (25 bp)
AGATGCCCTATAATTCCTTTTCCCT
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--930--10171Chr01:12880411..12880435 (25 bp)
TATAATTCCTTTTCCCTGTACATCA
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--417--5211Chr01:12880443..12880467 (25 bp)
GAATTTTCGAATTAATGCAGGTCAC
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--613--9051Chr01:12880458..12880482 (25 bp)
TGCAGGTCACTATGTGCCACAGCTT
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--490--3311Chr01:12880475..12880499 (25 bp)
CACAGCTTGCAGACCTTGTCTATGA
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--779--2871Chr01:12880541..12880928 (25 bp)
AAGGGTTCATTGTTGGTAATCCACT
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--975--10131Chr01:12880966..12880990 (25 bp)
TATGCTTGGAGCCACGCAGTTGTGT
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--797--8791Chr01:12881283..12881307 (25 bp)
TGTTCTCAGGATATGACGCGTGCTA
LOC_Os01g22954
OsAffx.1775.1.S1_x_at--949--1811Chr01:12881298..12881322 (25 bp)
ACGCGTGCTACTCATCATATGCTGA
LOC_Os01g22954
Target Sequence 
GATGGTTTTGTAGCCGAGGACGCATATAATTTCCTGGTAAATTGGTTGGACAGATTTCCACAGTACAAAGACCATGAATT
CTATATTTCAGGAGAGAGCTATGCAGAATTATGTGATATCTCATATGCGGTAGTAAAAAAGATGCCCTATAATTCCTTTT
CCCTGTACATCACCAACAAGAATTTTCGAATTAATGCAGGTCACTATGTGCCACAGCTTGCAGACCTTGTCTATGAGAGG
AACAAAGACAAGAAGGCCAACAGATATATCAAACTGAAAGGGTTCATTGTTGGTAATCCACTTACTGATGATCAGTACGA
CTCAAAAGGTCTTGTTGAATATGCTTGGAGCCACGCAGTTGTGTCAGATGGAATTTATGAGCGCGTCAAGAAGGAACAAT
TCAGTAGGAGGATTAGGATGTTCTCAGGATATGACGCGTGCTACTCATCATATGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1775.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis