Browse Element(s) Details


OsAffx.23347.1.S1_at

Description gb:NM_183882.1
DB_XREF= gi:34894891
GEN=B1140D12.11
TID=OsAffx.23347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1140D12.11 (B1140D12.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g230001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed
LOC_Os01g22990OsAffx.22867.1.S1_x_at11/111+12903980..12907269expressed protein
LOC_Os01g22990Os.7786.1.S1_at11/111+12903980..12907269expressed protein
LOC_Os01g23000OsAffx.23347.1.S1_s_at11/111+12914892..12916022hypothetical protein
LOC_Os01g23000OsAffx.23347.1.S1_at1/111+12914892..12916022hypothetical protein
LOC_Os01g23010NANA1+12928204..12928488hypothetical protein
LOC_Os01g23020NANA1+12932851..12939580retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23347.1.S1_at--586--7611Chr01:12916554..12916578 (25 bp)
GGGCAAGGCAACACTCCGACTGAAA
NONE
OsAffx.23347.1.S1_at--1093--8211Chr01:12916553..12916577 (25 bp)
GGCAAGGCAACACTCCGACTGAAAG
NONE
OsAffx.23347.1.S1_at--75--5171Chr01:12916552..12916576 (25 bp)
GCAAGGCAACACTCCGACTGAAAGA
NONE
OsAffx.23347.1.S1_at--1022--931Chr01:12916549..12916573 (25 bp)
AGGCAACACTCCGACTGAAAGAGAT
NONE
OsAffx.23347.1.S1_at--918--5331Chr01:12916476..12916500 (25 bp)
GAAGAATTTAAGGTTTCACTAACAG
NONE
OsAffx.23347.1.S1_at--330--5191Chr01:12916476..12916497 (22 bp)
GAATTTAAGGTTTCACTAACAGAGG
NONE
OsAffx.23347.1.S1_at--443--10491NONE
TTAAGGTTTCACTAACAGAGGATCA
NONE
OsAffx.23347.1.S1_at--348--2911NONE
AAGGTTTCACTAACAGAGGATCAGC
NONE
OsAffx.23347.1.S1_at--810--7851NONE
GGTTTCACTAACAGAGGATCAGCCG
NONE
OsAffx.23347.1.S1_at--26--6831NONE
GTTTCACTAACAGAGGATCAGCCGA
NONE
OsAffx.23347.1.S1_at--231--1032Chr09:13908309..13908399 (25 bp)
AGGTCGTCGAACTGCGAAGCTGGTC
NONE
Target Sequence 
GGGCAAGGCAACACTCCGACTGAAAGAGATGGGGGAAGAGGGGAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGGAAGA
AGAATTTAAGGTTTCACTAACAGAGGATCAGCCGAGCAGAGGGGAGCGGAGCAGTGCCGCCGGTGGCGGCGGCGGCGGCG
ACGAGGCCTGGGTGGATGACCGAGAGGAAGGGGCGCGGGTGTCGGCGAGGCCCCACGCGAGCTCGGCGAGCTCGAGGCGA
CATCACGTCAGGCTCCCAAAGCTGGCGTACAGCACCGACCCGGTCGGCTGCTCGTCAAGCCAAGCCATGCACGCGGCGTC
CTCTTCCCACAGGCTCAGCCCAGCGGCGCCGCCGCCGACTAGGTTGTTTGCGCGGTCGGCGCCGAGCGGGCCGATGGTGT
ACACGCGCGGGAACTCGTCCTTGAGCACGTCGAAGACGTCGGACTCGAGGTCGTCGAACTGCGAAGCTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis