Browse Element(s) Details


Os.15062.1.S1_a_at

Description gb:AK061997.1
DB_XREF= gi:32972015
TID=Os.15062.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine carboxypeptidase II-like protein (B1140D12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C12, full insert sequence.
FL= gb:AK061997.1 gb:AK067493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2298011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22930OsAffx.10665.3.S1_x_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.3.S1_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.1.S1_x_at2/111+12872967..12873994hypothetical protein
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed
LOC_Os01g22990OsAffx.22867.1.S1_x_at11/111+12903980..12907269expressed protein
LOC_Os01g22990Os.7786.1.S1_at11/111+12903980..12907269expressed protein
LOC_Os01g23000OsAffx.23347.1.S1_s_at11/111+12914892..12916022hypothetical protein
LOC_Os01g23000OsAffx.23347.1.S1_at1/111+12914892..12916022hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15062.1.S1_a_at--1073--1531Chr01:12898823..12898847 (25 bp)
AGCTTATCAAGGCTGGCCTACGAAT
LOC_Os01g22980
Os.15062.1.S1_a_at--934--3191Chr01:12898816..12898840 (25 bp)
CAAGGCTGGCCTACGAATATGGGTC
LOC_Os01g22980
Os.15062.1.S1_a_at--172--10231Chr01:12898437..12898461 (25 bp)
TATTGGATCCCGGTACTGCGTAGAA
LOC_Os01g22980
Os.15062.1.S1_a_at--780--3891Chr01:12898427..12898451 (25 bp)
CGGTACTGCGTAGAAGCCCTTGGCC
LOC_Os01g22980
Os.15062.1.S1_a_at--390--8571Chr01:12898379..12898400 (22 bp)
TGGTACCTAAACAATCAGGTTGCTG
LOC_Os01g22980
Os.15062.1.S1_a_at--227--2911Chr01:12898214..12898238 (25 bp)
AAGGATTGACAATGGCCACAGTAAG
LOC_Os01g22980
Os.15062.1.S1_a_at--703--5891Chr01:12898187..12898211 (25 bp)
GAGCTGGACATGCAGTGCCACAAGA
LOC_Os01g22980
Os.15062.1.S1_a_at--1138--7271Chr01:12898173..12898197 (25 bp)
GTGCCACAAGACAAGCCAGAACAGG
LOC_Os01g22980
Os.15062.1.S1_a_at--1026--3471Chr01:12898152..12898176 (25 bp)
CAGGCACTGGTGGTAATCAATTCCT
LOC_Os01g22980
Os.15062.1.S1_a_at--1021--351Chr01:12898137..12898161 (25 bp)
ATCAATTCCTTTCTTTCAGGCAGGC
LOC_Os01g22980
Os.15062.1.S1_a_at--287--10311Chr01:12898124..12898148 (25 bp)
TTTCAGGCAGGCGACTACCAACAAA
LOC_Os01g22980
Target Sequence 
AGCTTATCAAGGCTGGCCTACGAATATGGGTCTACAGTGGAGACGTGGATGGCAGGGTTCCAGTTATTGGATCCCGGTAC
TGCGTAGAAGCCCTTGGCCTTCCTGTTAAGTCACAGTGGCAACCATGGTACCTAAACAATCAGGTTGCTGGGAGATTTGT
TGAGTATCAAGGATTGACAATGGCCACAGTAAGAGGAGCTGGACATGCAGTGCCACAAGACAAGCCAGAACAGGCACTGG
TGGTAATCAATTCCTTTCTTTCAGGCAGGCGACTACCAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15062.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis