Browse Element(s) Details


OsAffx.10665.3.S1_at

Description tigr:9629.m02206
TID=OsAffx.10665.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2293011/11hypothetical protein
LOC_Os02g259905/11hypothetical protein
LOC_Os01g233102/11hypothetical protein
LOC_Os08g168701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22890OsAffx.19542.3.S1_x_at6/111+12844210..12848432retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g22920OsAffx.23722.5.S1_s_at11/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22920OsAffx.23722.5.S1_at9/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22930OsAffx.10665.3.S1_x_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.3.S1_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.1.S1_x_at2/111+12872967..12873994hypothetical protein
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10665.3.S1_at--657--2311Chr01:12873904..12873928 (25 bp)
AAAGGACTACCATGCATTCATGTCT
LOC_Os01g22930
OsAffx.10665.3.S1_at--1158--3511Chr01:12873894..12873918 (25 bp)
CATGCATTCATGTCTTTCGTGTTAG
LOC_Os01g22930
OsAffx.10665.3.S1_at--446--4951Chr01:12873891..12873915 (25 bp)
GCATTCATGTCTTTCGTGTTAGAGA
LOC_Os01g22930
OsAffx.10665.3.S1_at--629--3673Chr07:5920669..5920693 (25 bp)
CTTTCGTGTTAGAGAGGTCCATGCG
NONE
OsAffx.10665.3.S1_at--191--72315Chr11:18512410..18512791 (25 bp)
GTCCCTGAGTAAAGCCAAAAATATG
NONE
OsAffx.10665.3.S1_at--708--2715Chr08:11526609..11526633 (25 bp)
ATATGGACTCAAGAAGATCATCAGT
NONE
OsAffx.10665.3.S1_at--752--53519Chr10:4214772..4214796 (25 bp)
GAAGATCATCAGTCATACTCCTAGA
NONE
OsAffx.10665.3.S1_at--147--96118Chr10:4214777..4214801 (25 bp)
TCATCAGTCATACTCCTAGATCAAG
NONE
OsAffx.10665.3.S1_at--397--71326Chr10:12186073..12186097 (25 bp)
GTCATACTCCTAGATCAAGGGTCTT
NONE
OsAffx.10665.3.S1_at--99--19931Chr10:12186078..12186102 (25 bp)
ACTCCTAGATCAAGGGTCTTTATTT
NONE
OsAffx.10665.3.S1_at--666--3713Chr10:12186086..12186110 (25 bp)
ATCAAGGGTCTTTATTTGTGGTGGA
NONE
Target Sequence 
AAAGGACTACCATGCATTCATGTCTTTCGTGTTAGAGAGGTCCATGCGAGGCTACCATGGCAGGGAATCGGATTGGGACT
CACCGGAGAGGGAGAAATCGAAGATGGAGCTCGGCGGCCGGAGTTGGAGAAGATGATGCCGATCTCCAAGATCGCTGCGC
CATTGGGTGGGGTACTTGGGGATGTTGGCGGTATAGAATCGGCATTTAATAACTGCCAACAAAACCCCCCACACTTAGCT
CTTTACTCGTCCCTGAGTAAAGCCAAAAATATGGACTCAAGAAGATCATCAGTCATACTCCTAGATCAAGGGTCTTTATT
TGTGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10665.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis