Browse Element(s) Details


Os.17741.1.S1_at

Description gb:AY187621.1
DB_XREF= gi:27948557
GEN=INV
TID=Os.17741.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17741 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) invertase (INV) mRNA, complete cds.
PROD=invertase
FL= gb:AY187621.1 gb:AK120720.1 gb:AK061240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2290011/11beta-fructofuranosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22860NANA1+12827227..12827829retrotransposon protein, putative, unclassified
LOC_Os01g22870Os.24743.1.S1_at11/111+12831404..12835879FAM18-like protein At1g09330, putative, expressed
LOC_Os01g22880OsAffx.23345.1.S1_at11/111+12841118..12841849expressed protein
LOC_Os01g22880OsAffx.28650.1.S1_x_at1/111+12841118..12841849expressed protein
LOC_Os01g22890OsAffx.19542.3.S1_x_at6/111+12844210..12848432retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g22920OsAffx.23722.5.S1_s_at11/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22920OsAffx.23722.5.S1_at9/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22930OsAffx.10665.3.S1_x_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.3.S1_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.1.S1_x_at2/111+12872967..12873994hypothetical protein
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17741.1.S1_at--934--9511Chr01:12855286..12855310 (25 bp)
TCTCTCGGCAACCTTTGGGCAATAA
LOC_Os01g22900
Os.17741.1.S1_at--577--9811Chr01:12855308..12855332 (25 bp)
TAACTTCATCTCTAACTACTCCAAA
LOC_Os01g22900
Os.17741.1.S1_at--508--8471Chr01:12855433..12855457 (25 bp)
TGGCGCATTATTACCGGCAGTGATC
LOC_Os01g22900
Os.17741.1.S1_at--1142--351Chr01:12855844..12855868 (25 bp)
ATAATGGTGGATCCTGGCCAACGCT
LOC_Os01g22900
Os.17741.1.S1_at--231--10131Chr01:12856068..12856092 (25 bp)
TATGACACCCGCTCTGGAAGATTCA
LOC_Os01g22900
Os.17741.1.S1_at--76--511Chr01:12856092..12856116 (25 bp)
ATCGGGAAGCAATCTCGGTCATATC
LOC_Os01g22900
Os.17741.1.S1_at--778--2031Chr01:12856125..12856149 (25 bp)
ACTATTGCTGGTTTTCTGACCTCTA
LOC_Os01g22900
Os.17741.1.S1_at--681--8691Chr01:12856221..12856245 (25 bp)
TGTGCATGCTGCCTTTCTAAGAAGA
LOC_Os01g22900
Os.17741.1.S1_at--556--2751Chr01:12856242..12856266 (25 bp)
AAGAGAACTAGGTGCTCACGCCGTG
LOC_Os01g22900
Os.17741.1.S1_at--852--1671Chr01:12856268..12856292 (25 bp)
AGCCAAGTCCCATGTCGTCGAGTAA
LOC_Os01g22900
Os.17741.1.S1_at--978--9311Chr01:12856303..12856327 (25 bp)
TCCCTTTTATACATGCTACTCTGCA
LOC_Os01g22900
Target Sequence 
TCTCTCGGCAACCTTTGGGCAATAACTTCATCTCTAACTACTCCAAAACAAGCTGAGGGAATACTTAGCCTTATTGATGA
GAAATGGGATGATCTCATAGCAAACATGCCCCTCAAGATATGTTACCCCGCAATGGAAGATGATGAATGGCGCATTATTA
CCGGCAGTGATCCTAAGAACACCCCATGGTCATATCATAATGGTGGATCCTGGCCAACGCTGCTGTGGCAGTTTACATTG
GCCTGTATCAAAATGGGAAGACCAGAGTTGGCCCGAAGAGCCATTGCTGTGGCCGAGGANAANCTGGCAGCTGACAAATG
GCCAGAGTACTATGACACCCGCTCTGGAAGATTCATCGGGAAGCAATCTCGGTCATATCAGACATGGACTATTGCTGGTT
TTCTGACCTCTAAGATGCTATTGGAAAACCCCGAGCTGGCTTCTATTCTGACCTGCNATGAGGACCTCGAGCTGCTTGAA
GGCTGTGCATGCTGCCTTTCTAAGAAGAGAACTAGGTGCTCACGCCGTGCAGCCAAGTCCCATGTCGTCGAGTAAAACAG
CAGAGTCCCTTTTATACATGCTACTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis