Browse Element(s) Details


OsAffx.23722.5.S1_at

Description tigr:9629.m02205
TID=OsAffx.23722.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g229209/11Gibberellin 2-beta-dioxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22890OsAffx.19542.3.S1_x_at6/111+12844210..12848432retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g22920OsAffx.23722.5.S1_s_at11/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22920OsAffx.23722.5.S1_at9/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22930OsAffx.10665.3.S1_x_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.3.S1_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.1.S1_x_at2/111+12872967..12873994hypothetical protein
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23722.5.S1_at--324--4371Chr01:12867958..12867982 (25 bp)
CCACAGCAGCAACATTAACGCCATG
LOC_Os01g22920
OsAffx.23722.5.S1_at--566--3311Chr01:12867957..12867981 (25 bp)
CACAGCAGCAACATTAACGCCATGG
LOC_Os01g22920
OsAffx.23722.5.S1_at--497--2151Chr01:12867956..12867980 (25 bp)
ACAGCAGCAACATTAACGCCATGGT
LOC_Os01g22920
OsAffx.23722.5.S1_at--180--3411Chr01:12867955..12867979 (25 bp)
CAGCAGCAACATTAACGCCATGGTG
LOC_Os01g22920
OsAffx.23722.5.S1_at--333--1511Chr01:12867954..12867978 (25 bp)
AGCAGCAACATTAACGCCATGGTGG
LOC_Os01g22920
OsAffx.23722.5.S1_at--802--5031Chr01:12867953..12867977 (25 bp)
GCAGCAACATTAACGCCATGGTGGT
LOC_Os01g22920
OsAffx.23722.5.S1_at--970--3391Chr01:12867952..12867976 (25 bp)
CAGCAACATTAACGCCATGGTGGTG
LOC_Os01g22920
OsAffx.23722.5.S1_at--724--1471Chr01:12867951..12867975 (25 bp)
AGCAACATTAACGCCATGGTGGTGC
LOC_Os01g22920
OsAffx.23722.5.S1_at--640--5151Chr01:12867950..12867974 (25 bp)
GCAACATTAACGCCATGGTGGTGCC
LOC_Os01g22920
Target Sequence 
CCACAGCAGCAACATTAACGCCATGGTGGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23722.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis