Browse Element(s) Details


OsAffx.8735.1.A1_at

Description gb:XM_354114.1
DB_XREF= gi:35189661
TID=OsAffx.8735.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g229541/11Serine carboxypeptidase II precursor, putative, expressed
LOC_Os04g310001/11expressed protein
LOC_Os09g015201/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g22920OsAffx.23722.5.S1_s_at11/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22920OsAffx.23722.5.S1_at9/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22930OsAffx.10665.3.S1_x_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.3.S1_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.1.S1_x_at2/111+12872967..12873994hypothetical protein
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed
LOC_Os01g22990OsAffx.22867.1.S1_x_at11/111+12903980..12907269expressed protein
LOC_Os01g22990Os.7786.1.S1_at11/111+12903980..12907269expressed protein
LOC_Os01g23000OsAffx.23347.1.S1_s_at11/111+12914892..12916022hypothetical protein
LOC_Os01g23000OsAffx.23347.1.S1_at1/111+12914892..12916022hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0003824molecular_functioncatalytic activity
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8735.1.A1_at--849--10731Chr07:3293543..3293567 (25 bp)
TTGAACAGTTGCATGTCCGGTCTTT
NONE
OsAffx.8735.1.A1_at--315--2496Chr09:374506..374525 (20 bp)
AACAGTTGCATGTCCGGTCTTTCTA
LOC_Os09g01520
OsAffx.8735.1.A1_at--1028--10732Chr07:3293551..3293575 (25 bp)
TTGCATGTCCGGTCTTTCTATTTGA
NONE
OsAffx.8735.1.A1_at--322--6831Chr07:3293642..3293666 (25 bp)
GTCTTTCTATTTGACCGAACCGTGC
NONE
OsAffx.8735.1.A1_at--815--10571Chr07:3293646..3293670 (25 bp)
TTCTATTTGACCGAACCGTGCCAAC
NONE
OsAffx.8735.1.A1_at--984--10174Chr07:3293649..3293673 (25 bp)
TATTTGACCGAACCGTGCCAACCTC
NONE
OsAffx.8735.1.A1_at--1154--7251Chr07:3293583..3293607 (25 bp)
GTGCCAACCTCTAGTTCCGGTTGAA
NONE
OsAffx.8735.1.A1_at--731--9531Chr07:3293672..3293696 (25 bp)
TCTAGTTCCGGTTGAACAGCCGGTC
NONE
OsAffx.8735.1.A1_at--1062--10311Chr07:3293708..3293732 (25 bp)
TTTACACTAGGCACCAAACCAACGA
NONE
OsAffx.8735.1.A1_at--19--3271Chr07:3293722..3293746 (25 bp)
CAAACCAACGAGGATTCCTGCCGTT
NONE
OsAffx.8735.1.A1_at--237--1831Chr07:3293729..3293753 (25 bp)
ACGAGGATTCCTGCCGTTAATTTAT
NONE
Target Sequence 
TTGAACAGTTGCATGTCCGGTCTTTCTATTTGACCGAACCGTGCCAACCTCTAGTTCCGGTTGAACAGCCGGTCCGGTCC
GGTTTTTTACACTAGGCACCAAACCAACGAGGATTCCTGCCGTTAATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8735.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis