Browse Element(s) Details


Os.7786.1.S1_at

Description gb:AK069030.1
DB_XREF= gi:32979054
TID=Os.7786.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003F03, full insert sequence.
FL= gb:AK069030.1 gb:AK065940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2299011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed
LOC_Os01g22990OsAffx.22867.1.S1_x_at11/111+12903980..12907269expressed protein
LOC_Os01g22990Os.7786.1.S1_at11/111+12903980..12907269expressed protein
LOC_Os01g23000OsAffx.23347.1.S1_s_at11/111+12914892..12916022hypothetical protein
LOC_Os01g23000OsAffx.23347.1.S1_at1/111+12914892..12916022hypothetical protein
LOC_Os01g23010NANA1+12928204..12928488hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7786.1.S1_at--94--6311Chr01:12904331..12904355 (25 bp)
GATGATGGTAGACCCTCAAAGCGAT
LOC_Os01g22990
Os.7786.1.S1_at--808--6191Chr01:12904328..12904352 (25 bp)
GATGGTAGACCCTCAAAGCGATAGT
LOC_Os01g22990
Os.7786.1.S1_at--378--8591Chr01:12904326..12904350 (25 bp)
TGGTAGACCCTCAAAGCGATAGTTG
LOC_Os01g22990
Os.7786.1.S1_at--523--3611Chr01:12904022..12904046 (25 bp)
CTTGGTGCTTCGTACTGAATCCTGC
LOC_Os01g22990
Os.7786.1.S1_at--949--7751Chr01:12904019..12904043 (25 bp)
GGTGCTTCGTACTGAATCCTGCCTG
LOC_Os01g22990
Os.7786.1.S1_at--689--3031Chr01:12904005..12904029 (25 bp)
AATCCTGCCTGCCACCATGATGTTT
LOC_Os01g22990
Os.7786.1.S1_at--218--9191Chr01:12904000..12904024 (25 bp)
TGCCTGCCACCATGATGTTTCTCTT
LOC_Os01g22990
Os.7786.1.S1_at--995--3811Chr01:12903997..12904021 (25 bp)
CTGCCACCATGATGTTTCTCTTTAC
LOC_Os01g22990
Os.7786.1.S1_at--937--4351Chr01:12903994..12904018 (25 bp)
CCACCATGATGTTTCTCTTTACCAA
LOC_Os01g22990
Os.7786.1.S1_at--924--1711Chr01:12903992..12904016 (25 bp)
ACCATGATGTTTCTCTTTACCAAAT
LOC_Os01g22990
Os.7786.1.S1_at--766--8871Chr01:12903988..12904012 (25 bp)
TGATGTTTCTCTTTACCAAATTTTT
LOC_Os01g22990
Target Sequence 
GATGATGGTAGACCCTCAAAGCGATAGTTGAGCAGCTCATCTGGGGTCAGTTGTGTCCTCTGCAGGGTGCTAGAAAGAAA
ATAATCCTCTTGGGGAGAAGATTGTTGGTAAATGCTTGTAGCTTTAGGACATCTGTGGTTTAGGTTTAGCAGCTCAAAAA
CTTGAGAGACAGTCCATCATGTTAGTCGTTAGTGCATACTGCTGATGTGTTTGATTAACAGCCTCTTTGAGAACATCATC
TGTATGAGGAAAGATATGAGAGGCTTGCTTTATGCTTTGTGTAGCTTCTAATTNCAGGTCTCTGGAATTTCTTGGTGCTT
CGTACTGAATCCTGCCTGCCACCATGATGTTTCTCTTTACCAAATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis