Browse Element(s) Details


OsAffx.5309.1.S1_at

Description gb:NM_186714.1
DB_XREF= gi:34900513
GEN=P0407H12.24
TID=OsAffx.5309.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (P0407H12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g131805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13140OsAffx.1455.1.S1_at11/117+7522318..7530761retrotransposon protein, putative, unclassified
LOC_Os07g13140OsAffx.4851.1.S1_x_at1/117+7522318..7530761retrotransposon protein, putative, unclassified
LOC_Os07g13160Os.31647.1.S1_at11/117+7540188..7541183expressed protein
LOC_Os07g13160OsAffx.30595.1.S1_at1/117+7540188..7541183expressed protein
LOC_Os07g13170Os.27471.1.S1_at11/117+7543851..7548218indeterminate spikelet 1, putative, expressed
LOC_Os07g13180OsAffx.5309.1.S1_at5/117+7548795..7551618hypothetical protein
LOC_Os07g13190Os.31497.2.S1_x_at1/117+7562697..7566028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13200NANA7+7568110..7570312hypothetical protein
LOC_Os07g13210OsAffx.19614.1.A1_at2/117+7570871..7571593Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein
LOC_Os07g13220NANA7+7573736..7574101hypothetical protein
LOC_Os07g13230NANA7+7576011..7576807Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5309.1.S1_at--105--1891Chr07:7551672..7551696 (25 bp)
ACGATGATGACTTCGTCTCAGCTAT
NONE
OsAffx.5309.1.S1_at--663--711Chr07:7551669..7551693 (25 bp)
ATGATGACTTCGTCTCAGCTATGGC
NONE
OsAffx.5309.1.S1_at--550--671Chr07:7551666..7551690 (25 bp)
ATGACTTCGTCTCAGCTATGGCTTC
NONE
OsAffx.5309.1.S1_at--1036--3391Chr07:7551654..7551678 (25 bp)
CAGCTATGGCTTCCCCTCAGCAGAT
NONE
OsAffx.5309.1.S1_at--810--3451Chr07:7551620..7551644 (25 bp)
CAGTGTGAAGGAGACCAGTGGCAAC
NONE
OsAffx.5309.1.S1_at--546--5851Chr07:7551608..7551632 (25 bp)
GACCAGTGGCAACGATGAAGAGAAT
NONE
OsAffx.5309.1.S1_at--860--8991Chr07:7551593..7551617 (25 bp)
TGAAGAGAATGGATCTAGCAGTGGC
LOC_Os07g13180
OsAffx.5309.1.S1_at--599--8471Chr07:7551572..7551596 (25 bp)
TGGCGGTGCTCAAGACCACTGGATT
LOC_Os07g13180
OsAffx.5309.1.S1_at--368--7311Chr07:7551567..7551591 (25 bp)
GTGCTCAAGACCACTGGATTCGCCT
LOC_Os07g13180
OsAffx.5309.1.S1_at--116--3811Chr07:7551544..7551568 (25 bp)
CTCCACGGCGGCAAAAGAGAGGGAT
LOC_Os07g13180
OsAffx.5309.1.S1_at--464--11Chr07:7551482..7551506 (25 bp)
TTCGGGGTCGCCAGGTCAACTTCCA
LOC_Os07g13180
Target Sequence 
ACGATGATGACTTCGTCTCAGCTATGGCTTCCCCTCAGCAGATCCTCCTCCACAGTGTGAAGGAGACCAGTGGCAACGAT
GAAGAGAATGGATCTAGCAGTGGCGGTGCTCAAGACCACTGGATTCGCCTCCACGGCGGCAAAAGAGAGGGATGGTGGTG
GTGAAGGAGGTGGGTCTGGTAGCGGCGGTGTTCGGGGTCGCCAGGTCAACTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis