Browse Element(s) Details


OsAffx.7493.1.S1_at

Description tigr:9640.m00493
TID=OsAffx.7493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0574011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05690Os.55494.1.S1_at11/1112+2621162..2622107expressed protein
LOC_Os12g05700OsAffx.20241.1.S1_at7/1112+2628448..2631699transposon protein, putative, Mutator sub-class
LOC_Os12g05709OsAffx.31600.1.S1_at11/1112+2634630..2635889F-box domain containing protein
LOC_Os12g05720Os.19579.1.S1_at2/1112+2640774..2642240hypothetical protein
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein
LOC_Os12g05750OsAffx.19508.1.S1_at11/1112+2649653..2650771Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g05760OsAffx.31601.1.S1_s_at11/1112+2652133..2653602dnaK protein, expressed
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7493.1.S1_at--780--10571Chr12:2647764..2647788 (25 bp)
TTCTGTTACAGAATGCACCTGCCCT
LOC_Os12g05740
OsAffx.7493.1.S1_at--666--1571Chr12:2647835..2647859 (25 bp)
AGCTACTATCTGACAGGCTGCTTGC
LOC_Os12g05740
OsAffx.7493.1.S1_at--458--8331Chr12:2647850..2648028 (25 bp)
GGCTGCTTGCCAAGATAGTTCCCAA
LOC_Os12g05740
OsAffx.7493.1.S1_at--559--10031Chr12:2648019..2648043 (25 bp)
TAGTTCCCAAGGTTGCAAGAGTCAA
LOC_Os12g05740
OsAffx.7493.1.S1_at--531--5551Chr12:2648044..2648068 (25 bp)
GAAACCAGTTTCCAGTTCAGAGGTA
LOC_Os12g05740
OsAffx.7493.1.S1_at--1128--6071Chr12:2648075..2648099 (25 bp)
GAGTTTGGTGTTTCTGCATATTCAA
LOC_Os12g05740
OsAffx.7493.1.S1_at--200--7511Chr12:2649001..2649025 (25 bp)
GTGGTATGAGTAACCCTGTCCAGAA
LOC_Os12g05740
OsAffx.7493.1.S1_at--452--6151Chr12:2649063..2649087 (25 bp)
GAGGTCTTCAAGATCCCTTGGATAT
LOC_Os12g05740
OsAffx.7493.1.S1_at--578--10211Chr12:2649119..2649143 (25 bp)
TATTTTCCTTTGGTACCTGTGGTGG
LOC_Os12g05740
OsAffx.7493.1.S1_at--202--8671Chr12:2649136..2649160 (25 bp)
TGTGGTGGTCTAAGGCAGCATCAAA
LOC_Os12g05740
OsAffx.7493.1.S1_at--199--5451Chr12:2649188..2649212 (25 bp)
GAACCGAAATTGGAGGCTGTCATCA
LOC_Os12g05740
Target Sequence 
TTCTGTTACAGAATGCACCTGCCCTCTAGAACTACAAGGCATGTTGAAGGAGGAATGTGTTGATCAGTACAAGCTACTAT
CTGACAGGCTGCTTGCCAAGATAGTTCCCAAGGTTGCAAGAGTCAAGAAACCAGTTTCCAGTTCAGAGGTATATGCAGAG
TTTGGTGTTTCTGCATATTCAAAATATGGTACAAGAACAGTGAGTACATCATTGAGAGTATGCAGGCAGGAAAAAACTTC
ATCGAGTGGTATGAGTAACCCTGTCCAGAAGGATCATCCTGTGAGAAATGCACATGGAACTGGCAATGAGGTCTTCAAGA
TCCCTTGGATATTTGGTTCAGTGGCATTCTGTGTGATATTACTTATTTTCCTTTGGTACCTGTGGTGGTCTAAGGCAGCA
TCAAATGCATGCCAACTGCAGTCCCTTCCCCTGAACCGAAATTGGAGGCTGTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis