Browse Element(s) Details


OsAffx.19508.1.S1_at

Description tigr:9640.m00494
TID=OsAffx.19508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=nucleoid DNA-binding protein cnd41-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0575011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05700OsAffx.20241.1.S1_at7/1112+2628448..2631699transposon protein, putative, Mutator sub-class
LOC_Os12g05709OsAffx.31600.1.S1_at11/1112+2634630..2635889F-box domain containing protein
LOC_Os12g05720Os.19579.1.S1_at2/1112+2640774..2642240hypothetical protein
LOC_Os12g05730Os.5624.1.S1_at11/1112+2642976..2644316Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os12g05740OsAffx.7493.1.S1_at11/1112+2646733..2649299expressed protein
LOC_Os12g05750OsAffx.19508.1.S1_at11/1112+2649653..2650771Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g05760OsAffx.31601.1.S1_s_at11/1112+2652133..2653602dnaK protein, expressed
LOC_Os12g05770OsAffx.19509.1.S1_at11/1112+2658497..2659261expressed protein
LOC_Os12g05780Os.7585.1.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05780Os.7585.2.S1_at11/1112+2660959..2665741transporter, putative, expressed
LOC_Os12g05790OsAffx.7494.1.S1_at10/1112+2667725..2668922hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19508.1.S1_at--126--6551Chr12:2650219..2650243 (25 bp)
GATTATACCGCGTTTTCTTACTGCT
LOC_Os12g05750
OsAffx.19508.1.S1_at--758--10472Chr06:27478181..27478205 (24 bp)
TTACTGCTTCCCCAGAGATCATGAG
NONE
OsAffx.19508.1.S1_at--612--1051Chr12:2650172..2650196 (25 bp)
AGGGTCACTGACCATTGGGCCATAT
LOC_Os12g05750
OsAffx.19508.1.S1_at--267--3611Chr12:2650160..2650184 (25 bp)
CATTGGGCCATATGCCAGAGATATC
LOC_Os12g05750
OsAffx.19508.1.S1_at--619--3171Chr12:2650010..2650034 (25 bp)
AATTGTTGATTCTGGCACTGCTGAT
LOC_Os12g05750
OsAffx.19508.1.S1_at--526--6471Chr12:2649988..2650012 (25 bp)
GATACATACATTTTATCCCCGGTGT
LOC_Os12g05750
OsAffx.19508.1.S1_at--90--4211Chr12:2649972..2649996 (25 bp)
CCCCGGTGTTTGATGCACTGGACAA
LOC_Os12g05750
OsAffx.19508.1.S1_at--34--9071Chr12:2649886..2649910 (25 bp)
TGCTTCATTTCAAACAGTGGCTCAG
LOC_Os12g05750
OsAffx.19508.1.S1_at--406--6291Chr12:2649833..2649857 (25 bp)
GATGAAACTTATCAGGTCTACCTTG
LOC_Os12g05750
OsAffx.19508.1.S1_at--1161--7131Chr12:2649818..2649842 (25 bp)
GTCTACCTTGAAGCTGCCAGTGGAA
LOC_Os12g05750
OsAffx.19508.1.S1_at--710--751Chr12:2649768..2649792 (25 bp)
ATGTAATTTGCTCCACTTTTCTGCC
LOC_Os12g05750
Target Sequence 
GATTATACCGCGTTTTCTTACTGCTTCCCCAGAGATCATGAGAATGAAGGGTCACTGACCATTGGGCCATATGCCAGAGA
TATCAATCTTATGTGGACAAAATTGATCTACTACGATCATAAACCAGCATATGCTATTCAGCAGCTTGATATGATGGTCA
ATGGAATCAGGCTTGAAATTGATCCATATATCTATATATCCAAGATGACAATTGTTGATTCTGGCACTGCTGATACATAC
ATTTTATCCCCGGTGTTTGATGCACTGGACAAAGCGATGACGAAGGAAATGCAAGCCAAGGGATATACCAGAGGATGGGA
TGAAAGGAGGATTTGCTTCATTTCAAACAGTGGCTCAGCAAACTGGAATGACTTTCCAACAGTGGAGATGAAACTTATCA
GGTCTACCTTGAAGCTGCCAGTGGAAAATGCATTCTATGAAAGCTCAAACAATGTAATTTGCTCCACTTTTCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis