Browse Element(s) Details


OsAffx.25312.1.S1_at

Description tigr:9631.m03053
TID=OsAffx.25312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3112011/11hypothetical protein
LOC_Os10g209901/11Ribosomal protein S12 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein
LOC_Os03g31160Os.7630.1.S1_s_at11/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23204.1.S1_at10/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23259.1.S1_at1/113+17696957..17698815expressed protein
LOC_Os03g31170Os.5655.1.S1_at11/113+17700306..17703399Inosine-uridine preferring nucleoside hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25312.1.S1_at--405--2631Chr03:17679851..17679875 (25 bp)
AACCGGCGGTGCGTCGGTAGCAGGC
LOC_Os03g31120
OsAffx.25312.1.S1_at--450--991Chr03:17679746..17679770 (25 bp)
AGGAGGCGGCGCGTTGGTCCCAGGT
LOC_Os03g31120
OsAffx.25312.1.S1_at--697--2491Chr03:17679557..17679581 (25 bp)
AACAGTCCCAGGCACTGACGCATTG
LOC_Os03g31120
OsAffx.25312.1.S1_at--329--6194Chr05:751956..751977 (22 bp)
GAGGAAGTTGCGCTTGTCGATGGTA
NONE
OsAffx.25312.1.S1_at--198--10211Chr03:17678475..17678808 (25 bp)
TATTTTTGGGATTAAGTGGCAAACA
LOC_Os03g31120
OsAffx.25312.1.S1_at--1103--5131Chr03:17678457..17678481 (25 bp)
GCAAACAGTAGAATGCCCTGAGAGA
LOC_Os03g31120
OsAffx.25312.1.S1_at--307--5531Chr03:17678396..17678420 (25 bp)
GAAAAAGACTGGACTGTTGACATGT
LOC_Os03g31120
OsAffx.25312.1.S1_at--275--4371Chr03:17678366..17678390 (25 bp)
CCACGTGGGTTCCTCACTGATTTAG
LOC_Os03g31120
OsAffx.25312.1.S1_at--411--3991Chr03:17678363..17678387 (25 bp)
CGTGGGTTCCTCACTGATTTAGCTG
LOC_Os03g31120
OsAffx.25312.1.S1_at--246--10012Chr03:17678344..17678368 (25 bp)
TAGCTGGGTTGAGCACAATCGACTT
LOC_Os03g31120
OsAffx.25312.1.S1_at--850--6651Chr03:17678337..17678361 (25 bp)
GTTGAGCACAATCGACTTGCCACTT
LOC_Os03g31120
Target Sequence 
AACCGGCGGTGCGTCGGTAGCAGGCGCGGGGCTCCCAAGCGACGGCGCGTCGGCCGCAGGCGCGGCTGTCCCAGGCGGCG
ACGCGACGGGTGGCGAGGAGGCGGCAGGAGGCGGCGCGTTGGTCCCAGGTGGCGGCGCGGGGCTCCTAGGCGGCGGCGCG
TCGGTAGCAGGCGTCCGCGCGGAGGTCCCAGGCATTGACGCGACGGGCGCCGAGGAGGTGGCAGGCGGCGGTGGCGCATC
GGCCGCAGGCGCGACAGTCCCAGGCGACGGCGCGTTGGCAGCAGGCGTCCGCACAACAGTCCCAGGCACTGACGCATTGG
GGGAGGAAGTTGCGCTTGTCGATGGTATTTTTGGGATTAAGTGGCAAACAGTAGAATGCCCTGAGAGAGATGGGGAAGAG
AGTGGAGAAAGGGAGGGAGAGGAGGAAAAAGACTGGACTGTTGACATGTGGGGCCCACGTGGGTTCCTCACTGATTTAGC
TGGGTTGAGCACAATCGACTTGCCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis