Browse Element(s) Details


OsAffx.12815.1.S1_at

Description tigr:9631.m00999
TID=OsAffx.12815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g108502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10820OsAffx.12813.1.S1_s_at11/113+5526246..5530487expressed protein
LOC_Os03g10830OsAffx.25046.1.S1_at11/113+5537093..5537856hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_s_at11/113+5546863..5549667hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_at5/113+5546863..5549667hypothetical protein
LOC_Os03g10850Os.14106.1.S1_at10/113+5552488..5555549expressed protein
LOC_Os03g10850OsAffx.12815.1.S1_at2/113+5552488..5555549expressed protein
LOC_Os03g10860Os.4660.1.S1_s_at11/113+5561171..5561827expressed protein
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12815.1.S1_at--1100--3731Chr03:5553084..5553108 (25 bp)
CTCAGTGGTTATGCTACGTGCACAA
LOC_Os03g10850
OsAffx.12815.1.S1_at--974--2971Chr03:5552777..5553085 (25 bp)
AATGTGGTCAATCGAAGCCTTGGAA
LOC_Os03g10850
OsAffx.12815.1.S1_at--1071--2791Chr03:5551814..5551838 (25 bp)
AAGATGAAGCGTCTTCCTCTGTTGG
NONE
OsAffx.12815.1.S1_at--1102--10651Chr03:5551801..5551825 (25 bp)
TTCCTCTGTTGGTTTTGCTACTCTT
NONE
OsAffx.12815.1.S1_at--990--5531Chr03:5551759..5551783 (25 bp)
GAAACATGTTGCTAGGGATCGCTTT
NONE
OsAffx.12815.1.S1_at--905--5371Chr03:5551726..5551750 (25 bp)
GAAGAAGCACTACGACATCCTCAGG
NONE
OsAffx.12815.1.S1_at--491--571Chr03:5551317..5551734 (25 bp)
ATCCTCAGGCTCATCGTTTTAGCAT
NONE
OsAffx.12815.1.S1_at--532--991Chr03:5550932..5550956 (25 bp)
AGGATCGATGACTACCGACCTGTTG
NONE
OsAffx.12815.1.S1_at--383--9971Chr03:5550920..5550944 (25 bp)
TACCGACCTGTTGATCCAAGTCCAA
NONE
OsAffx.12815.1.S1_at--712--9191Chr03:5550900..5550924 (25 bp)
TCCAAGCTCCAAGGCGACTATCGGG
NONE
OsAffx.12815.1.S1_at--528--1031Chr03:5550873..5550897 (25 bp)
AGGTCCAATTGAGCATGGCACTCCT
NONE
Target Sequence 
CTCAGTGGTTATGCTACGTGCACAATGTGGTCAATCGAAGCCTTGGAAAACCTATATTTCCTTGCCAGAGAGTAAATGCA
CGGTGGGGAAGCAGCGAGAGGAGGAAGGTGCAGAAGCATCTGAAGTTACGGTGTTGCAGGGGAGATGAAGATGAAGCGTC
TTCCTCTGTTGGTTTTGCTACTCTTTGCATTTCTTGGAGGAGGAAACATGTTGCTAGGGATCGCTTTGGATGCAAGAAGA
AGCACTACGACATCCTCAGGCTCATCGTTTTAGCATTTGTTTGTTTAGATTATGTGGTGGCAATAAACAATGTACTGACA
ATGGATGACATTTTTGCTACATTCATAGCAGATCATCAAACCTATGGAAGCATTGAGCTAAACGGCAGGAGATTACAGGA
AAGAAGACTTTCTTCTACTAACCGAAAGACAAGGGCCTTGGAAAATGTCAGGATCGATGACTACCGACCTGTTGATCCAA
GTCCAAGCTCCAAGGCGACTATCGGGGCAGGTCCAATTGAGCATGGCACTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis