Browse Element(s) Details


Os.13629.1.S1_at

Description gb:BI796766
DB_XREF= gi:15848490
DB_XREF=H054F10
CLONE=H054F10
TID=Os.13629.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.13629 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T49306 (A.thaliana) T49306 hypothetical protein T16L24.200 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1093011/11mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13629.1.S1_at--553--6251Chr03:5592688..5592712 (25 bp)
GATGTGATCATGTGAGTTGACCAGT
LOC_Os03g10930
Os.13629.1.S1_at--1012--1231Chr03:5592674..5592698 (25 bp)
AGTTGACCAGTTGGGTTCTCAGACA
LOC_Os03g10930
Os.13629.1.S1_at--840--10831Chr03:5592664..5592688 (25 bp)
TTGGGTTCTCAGACAAGCTGCTGAT
LOC_Os03g10930
Os.13629.1.S1_at--1043--1592Chr11:8792728..8792756 (23 bp)
AGCTGCTGATGTTCTTTGATGTCGT
NONE
Os.13629.1.S1_at--1128--6251Chr03:5592632..5592656 (25 bp)
GATGTCGTGATTGCAGAACTGTTTT
LOC_Os03g10930
Os.13629.1.S1_at--388--5471Chr03:5592617..5592641 (25 bp)
GAACTGTTTTCATATGCGTGTCAAG
LOC_Os03g10930
Os.13629.1.S1_at--131--7091Chr03:5592598..5592622 (25 bp)
GTCAAGAATTAGTCAGTGCAGCTAT
LOC_Os03g10930
Os.13629.1.S1_at--1061--10051Chr03:5592589..5592613 (25 bp)
TAGTCAGTGCAGCTATTCGACTCAC
LOC_Os03g10930
Os.13629.1.S1_at--155--9051Chr03:5592582..5592606 (25 bp)
TGCAGCTATTCGACTCACCTTTTTT
LOC_Os03g10930
Os.13629.1.S1_at--4--9871Chr03:5592550..5592574 (25 bp)
TACAGTTCAACTTTGTCTTTTTGTT
LOC_Os03g10930
Os.13629.1.S1_at--170--3671Chr03:5592534..5592558 (25 bp)
CTTTTTGTTTCGTCCGGTATCTGAT
LOC_Os03g10930
Target Sequence 
GATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTT
TCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGNATTACAGTTCAACTTTGTCTTTT
TGTTTCGTCCGGTATCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis