Browse Element(s) Details


Os.10384.1.S1_at

Description gb:AK072292.1
DB_XREF= gi:32982315
TID=Os.10384.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023016C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023016C20, full insert sequence.
FL= gb:AK072292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1095011/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein
LOC_Os03g10980OsAffx.12821.1.S1_at11/113+5620408..5622674tetratricopeptide repeat, putative
LOC_Os03g10990Os.8953.1.S1_at9/113+5625279..5629327retinoblastoma-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10384.1.S1_at--199--2091Chr03:5606488..5606512 (25 bp)
ACATACGACTGTTCTTGGTTCTTTA
LOC_Os03g10950
Os.10384.1.S1_at--908--6651Chr03:5606505..5606529 (25 bp)
GTTCTTTAATTTGCTCCCCAAATCG
LOC_Os03g10950
Os.10384.1.S1_at--976--2271Chr03:5606524..5606548 (25 bp)
AAATCGAGGTTTGCATTTGGCGCGA
LOC_Os03g10950
Os.10384.1.S1_at--375--10851Chr03:5606540..5606564 (25 bp)
TTGGCGCGAAATTGGCCGTTTCAGC
LOC_Os03g10950
Os.10384.1.S1_at--155--6791Chr03:5606577..5606601 (25 bp)
GTTTTTTAAGTTGCCAGTTGCCACG
LOC_Os03g10950
Os.10384.1.S1_at--776--1231Chr03:5606592..5606616 (25 bp)
AGTTGCCACGCAGGTCTGGTGTTCA
LOC_Os03g10950
Os.10384.1.S1_at--264--7431Chr03:5606610..5606634 (25 bp)
GTGTTCATCACCCTCAAATCGTTTT
LOC_Os03g10950
Os.10384.1.S1_at--722--471Chr03:5606627..5606651 (25 bp)
ATCGTTTTCTGGTTCAAAGCTTCAA
LOC_Os03g10950
Os.10384.1.S1_at--881--9111Chr03:5606687..5606711 (25 bp)
TGCTGCAACCACTTCATCGGAGAGA
LOC_Os03g10950
Os.10384.1.S1_at--175--2831Chr03:5606791..5606815 (25 bp)
AAGTTGCTCAAGCTTCTCCATTGGA
LOC_Os03g10950
Os.10384.1.S1_at--143--10271Chr03:5606830..5606854 (25 bp)
TTTGTTACTCCATCTGTTCTGTTAG
LOC_Os03g10950
Target Sequence 
ACATACGACTGTTCTTGGTTCTTTAATTTGCTCCCCAAATCGAGGTTTGCATTTGGCGCGAAATTGGCCGTTTCAGCCAG
AAANGTTTGGTTTTTTAAGTTGCCAGTTGCCACGCAGGTCTGGTGTTCATCACCCTCAAATCGTTTTCTGGTTCAAAGCT
TCAAAATTCAATTTGTTTTGGTTGGTTTTCTAGAAATAATGCTGCAACCACTTCATCGGAGAGAACTACGTGTAATTTAG
TTGTGAAGAGTAGACAGTAGTAGTACTGTAGTAGTGTCGTGTCTTGTAAATTCTAAACATAACAAGTTGCTCAAGCTTCT
CCATTGGAGAGAGGCATCCAAATTTGTTACTCCATCTGTTCTGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis