Browse Element(s) Details


OsAffx.12820.1.S1_at

Description tigr:9631.m01011
TID=OsAffx.12820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1097011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein
LOC_Os03g10980OsAffx.12821.1.S1_at11/113+5620408..5622674tetratricopeptide repeat, putative
LOC_Os03g10990Os.8953.1.S1_at9/113+5625279..5629327retinoblastoma-binding protein, putative, expressed
LOC_Os03g11010Os.1309.1.S1_at10/113+5634235..5638326Metal transporter Nramp3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12820.1.S1_at--208--1831Chr03:5614732..5614756 (25 bp)
ACGCCGCATCACTCGGATCAATGTC
LOC_Os03g10970
OsAffx.12820.1.S1_at--208--391Chr03:5614739..5614763 (25 bp)
ATCACTCGGATCAATGTCGCCGTCG
LOC_Os03g10970
OsAffx.12820.1.S1_at--292--9431Chr03:5614744..5614768 (25 bp)
TCGGATCAATGTCGCCGTCGCACGC
LOC_Os03g10970
OsAffx.12820.1.S1_at--475--10531Chr03:5614770..5614794 (25 bp)
TTCATCTGCACATCGCCCAGATCGG
LOC_Os03g10970
OsAffx.12820.1.S1_at--1031--9931Chr03:5614812..5614836 (25 bp)
TACGCTCGTCCTCGGACAGATGGGC
LOC_Os03g10970
OsAffx.12820.1.S1_at--433--9411Chr03:5614817..5614841 (25 bp)
TCGTCCTCGGACAGATGGGCACCAC
LOC_Os03g10970
OsAffx.12820.1.S1_at--392--7911Chr03:5616243..5616267 (25 bp)
GGTTGCTGGTGAACTTGCATGCCAT
LOC_Os03g10970
OsAffx.12820.1.S1_at--23--4731Chr03:5616247..5616271 (25 bp)
GCTGGTGAACTTGCATGCCATTCTT
LOC_Os03g10970
OsAffx.12820.1.S1_at--98--7371Chr03:5616251..5616275 (25 bp)
GTGAACTTGCATGCCATTCTTCAGT
LOC_Os03g10970
OsAffx.12820.1.S1_at--1143--4431Chr03:5616263..5616287 (25 bp)
GCCATTCTTCAGTGATGCGGTTGAA
LOC_Os03g10970
OsAffx.12820.1.S1_at--1125--10511Chr03:5616270..5616294 (25 bp)
TTCAGTGATGCGGTTGAAGTTACTT
LOC_Os03g10970
Target Sequence 
ACGCCGCATCACTCGGATCAATGTCGCCGTCGCACGCCTTCATCTGCACATCGCCCAGATCGGCACTCGCCCTCACCGCA
TACGCTCGTCCTCGGACAGATGGGCACCACCGCCGTCGCCGTCGCGCTCATTCCTCCCCGTCCAACCCGCGGGCCTCGCC
ACAGCCAACCCTGCCCACGAGATCCTGCCACTAAACAATGGTTAGAGGTTGCTGGTGAACTTGCATGCCATTCTTCAGTG
ATGCGGTTGAAGTTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis