Browse Element(s) Details


Os.8212.1.S1_at

Description gb:AK070806.1
DB_XREF= gi:32980829
TID=Os.8212.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072C15, full insert sequence.
FL= gb:AK070806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1105011/11ADP-glucose pyrophosphorylase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11010Os.1309.1.S1_at10/113+5634235..5638326Metal transporter Nramp3, putative, expressed
LOC_Os03g11020Os.55183.1.S1_at11/113+5649042..5651084pentatricopeptide, putative, expressed
LOC_Os03g11030OsAffx.25048.2.S1_at11/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11030OsAffx.25048.1.S1_at1/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11040OsAffx.25048.1.S1_at11/113+5656906..5659227Cyclin, N-terminal domain containing protein
LOC_Os03g11050Os.8212.1.S1_at11/113+5659762..5664482ADP-glucose pyrophosphorylase family protein, putative, expressed
LOC_Os03g11060Os.11435.1.S1_at11/113+5665732..5666671MFP1 attachment factor 1, putative, expressed
LOC_Os03g11069NANA3+5674771..5675681NA
LOC_Os03g11080OsAffx.25049.1.S1_at10/113+5677479..5678302hypothetical protein
LOC_Os03g11100Os.22923.1.S1_at11/113+5686519..5689193Got1-like family protein, expressed
LOC_Os03g11110Os.47373.1.S1_at11/113+5689355..5694124zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009408biological_processresponse to heat
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010193biological_processresponse to ozone
GO:0019853biological_processL-ascorbic acid biosynthesis
GO:0030244biological_processcellulose biosynthesis
GO:0004475molecular_functionmannose-1-phosphate guanylyltransferase activity
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8212.1.S1_at--883--7791Chr03:5660838..5660862 (25 bp)
GGTCCTAATGTCTCGATATCAGCAA
LOC_Os03g11050
Os.8212.1.S1_at--656--8091Chr03:5660796..5660820 (25 bp)
GGAGCCAGGCTTATTCATTGCATTA
LOC_Os03g11050
Os.8212.1.S1_at--834--7351Chr03:5660288..5660312 (25 bp)
GTGAAGGTGACCATAACGCCAAACT
LOC_Os03g11050
Os.8212.1.S1_at--860--1811Chr03:5660273..5660297 (25 bp)
ACGCCAAACTCGGTATCACAATTCT
LOC_Os03g11050
Os.8212.1.S1_at--76--9691Chr03:5660145..5660282 (25 bp)
TCACAATTCTTGGTGAAGCCGTTGA
LOC_Os03g11050
Os.8212.1.S1_at--873--1211Chr03:5660099..5660123 (25 bp)
AGTTAACAGCATTGTGCTCCCCAAT
LOC_Os03g11050
Os.8212.1.S1_at--289--351Chr03:5660076..5660100 (25 bp)
ATAAAACTCTCAATGTCAGTGTGCA
LOC_Os03g11050
Os.8212.1.S1_at--556--131Chr03:5660007..5660031 (25 bp)
ATTCAATTCCAAATAAGGTCTGCGG
LOC_Os03g11050
Os.8212.1.S1_at--749--4671Chr03:5659986..5660010 (25 bp)
GCGGACCAATATGTAGTTCCTCTCT
LOC_Os03g11050
Os.8212.1.S1_at--1011--8751Chr03:5659975..5659999 (25 bp)
TGTAGTTCCTCTCTTTTATTACCTC
LOC_Os03g11050
Os.8212.1.S1_at--435--5471Chr03:5659819..5659843 (25 bp)
GAACTAACGATTTTCATCAAGCATC
LOC_Os03g11050
Target Sequence 
GGTCCTAATGTCTCGATATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGT
TGAAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGG
GTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTT
AACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTC
ATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCC
CCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATG
TAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis