Browse Element(s) Details


Os.11435.1.S1_at

Description gb:AK107769.1
DB_XREF= gi:32992978
TID=Os.11435.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B05, full insert sequence.
FL= gb:AK107769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1106011/11MFP1 attachment factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11020Os.55183.1.S1_at11/113+5649042..5651084pentatricopeptide, putative, expressed
LOC_Os03g11030OsAffx.25048.2.S1_at11/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11030OsAffx.25048.1.S1_at1/113+5652273..5655373Cyclin, N-terminal domain containing protein
LOC_Os03g11040OsAffx.25048.1.S1_at11/113+5656906..5659227Cyclin, N-terminal domain containing protein
LOC_Os03g11050Os.8212.1.S1_at11/113+5659762..5664482ADP-glucose pyrophosphorylase family protein, putative, expressed
LOC_Os03g11060Os.11435.1.S1_at11/113+5665732..5666671MFP1 attachment factor 1, putative, expressed
LOC_Os03g11069NANA3+5674771..5675681NA
LOC_Os03g11080OsAffx.25049.1.S1_at10/113+5677479..5678302hypothetical protein
LOC_Os03g11100Os.22923.1.S1_at11/113+5686519..5689193Got1-like family protein, expressed
LOC_Os03g11110Os.47373.1.S1_at11/113+5689355..5694124zinc finger family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11435.1.S1_at--333--7631Chr03:5666114..5666138 (25 bp)
GGGACACCATCCTCTGCAAGCGCTA
LOC_Os03g11060
Os.11435.1.S1_at--648--6311Chr03:5666459..5666483 (25 bp)
GATGACTTGCATCTAAGAGTTCGTT
LOC_Os03g11060
Os.11435.1.S1_at--825--8471Chr03:5666494..5666518 (25 bp)
TGGCTTTGGTCTGGGAACCGATGTA
LOC_Os03g11060
Os.11435.1.S1_at--400--1791Chr03:5666510..5666534 (25 bp)
ACCGATGTAGGTTTCTTGCTCTGAT
LOC_Os03g11060
Os.11435.1.S1_at--799--10551Chr03:5666522..5666546 (25 bp)
TTCTTGCTCTGATTATCCGTGCAGT
LOC_Os03g11060
Os.11435.1.S1_at--678--552Chr03:5666536..5666560 (25 bp)
ATCCGTGCAGTTTGTTCTTTGATGA
LOC_Os03g11060
Os.11435.1.S1_at--697--9552Chr03:5666551..5666575 (25 bp)
TCTTTGATGAGTAGCTCCTGGCTCT
LOC_Os03g11060
Os.11435.1.S1_at--589--3911Chr03:5666568..5666592 (25 bp)
CTGGCTCTCTTTGTTCTTAGTATTT
LOC_Os03g11060
Os.11435.1.S1_at--627--10031Chr03:5666585..5666609 (25 bp)
TAGTATTTTACCTGTTTGCTTCCCA
LOC_Os03g11060
Os.11435.1.S1_at--753--4891Chr03:5666602..5666626 (25 bp)
GCTTCCCAGTTGTACTATCTCGTAG
LOC_Os03g11060
Os.11435.1.S1_at--647--3791Chr03:5666620..5666644 (25 bp)
CTCGTAGCAAGATTATGTTCCGTTT
LOC_Os03g11060
Target Sequence 
GGGACACCATCCTCTGCAAGCGCTACGGCGCGGTGCCGGCCGCCGACGCCGAGCCGGCCGCGCGGGGCATCGAGGCCGAG
GCCTTCGACGCCGCGGCGGCCAGCGGCGAGGCCGCGGCGACGGNGTCCGTGNAGNAGGGCATCAAGGCGCTGCAGCTCTA
CTCCAAGGAGGTCAGCCNCCGCCTCCTCGANTTNGTCAAGTCCCGNTCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCGC
CGCCCGAGGGAGAAGCCCCCGCTGCTCCTTCCGAGAGCGAGGTGGTGGATCCGCAGCCCGCGGAATGAGCGGCTCTCAGT
TCGTTACAATCTCATTGCCTGAGAAGATGACTTGCATCTAAGAGTTCGTTTGGAGAAATGTGGCTTTGGTCTGGGAACCG
ATGTAGGTTTCTTGCTCTGATTATCCGTGCAGTTTGTTCTTTGATGAGTAGCTCCTGGCTCTCTTTGTTCTTAGTATTTT
ACCTGTTTGCTTCCCAGTTGTACTATCTCGTAGCAAGATTATGTTCCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis