Browse Element(s) Details


Os.52478.1.S1_at

Description gb:AK067392.1
DB_XREF= gi:32977410
TID=Os.52478.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104G24, full insert sequence.
FL= gb:AK067392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0244011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g02450Os.53900.1.S1_at11/118+974865..977756Sodium/hydrogen exchanger family protein, expressed
LOC_Os08g02460Os.25130.1.S1_at10/118+977708..981577expressed protein
LOC_Os08g02470NANA8+988034..993870retrotransposon protein, putative, unclassified
LOC_Os08g02480NANA8+995411..997901retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52478.1.S1_at--828--1851Chr08:971972..971996 (25 bp)
ACGACGTGGTGTTCTCGACGCTCAA
LOC_Os08g02440
Os.52478.1.S1_at--906--871Chr08:972289..972313 (25 bp)
ATGGCCGCCGTTCTGCAGCAGCTTG
LOC_Os08g02440
Os.52478.1.S1_at--313--4411Chr08:972316..972340 (25 bp)
GCCACCCAGTAGTGACAGCGTCAAG
LOC_Os08g02440
Os.52478.1.S1_at--703--2691Chr08:972338..972362 (25 bp)
AAGCTGCCATTGTCACTGTAGGTTC
LOC_Os08g02440
Os.52478.1.S1_at--1140--7091Chr08:972349..972373 (25 bp)
GTCACTGTAGGTTCACCTTGTATTA
LOC_Os08g02440
Os.52478.1.S1_at--866--3611Chr08:972365..972389 (25 bp)
CTTGTATTATTAGCTAGGTGCCTAG
LOC_Os08g02440
Os.52478.1.S1_at--212--10091Chr08:972387..972411 (25 bp)
TAGGTGTTGTAGGAGCTAGCTAGCT
LOC_Os08g02440
Os.52478.1.S1_at--118--10011Chr08:972407..972431 (25 bp)
TAGCTGCCATTGTCGTTCTTCCAAG
LOC_Os08g02440
Os.52478.1.S1_at--541--9251Chr08:972445..972469 (25 bp)
TCCTTTCTCAGGAACTCGATCGTTT
LOC_Os08g02440
Os.52478.1.S1_at--133--2011Chr08:972458..972482 (25 bp)
ACTCGATCGTTTGCAAGTTAGCCAT
LOC_Os08g02440
Os.52478.1.S1_at--967--6771Chr08:972474..972498 (25 bp)
GTTAGCCATTGTTACATTTGCCAGA
LOC_Os08g02440
Target Sequence 
ACGACGTGGTGTTCTCGACGCTCAAGGACAGCGCCGCCATGGGCTACCTGGCGCCGGAGTACACGACGACGGGGCGGTTC
ACCGACCGGAGCGACGTCTACGCCTTCGGGGTGGTGGTGTTCCAGGTGCTGACGGGGAGGAAGGCGGTGTCGTCGGAGCT
CCGCCTCCTCGGCGGCGGTGGCGGCGCGGAGTACTCCGGCAAGCTGGACGACCTCGTCGACCCGCGCCTCGGCGGCCGGT
TCTCCAGGCCCGAGGCCGCCAAGCTCGCCGGCATCGCGCTGCTCTGCACCAGCGAGTCGCCGGCGCAGCGCCCCGCCATG
GCCGCCGTTCTGCAGCAGCTTGGCGCCACCCAGTAGTGACAGCGTCAAGCTGCCATTGTCACTGTAGGTTCACCTTGTAT
TATTAGCTAGGTGCCTAGGTGTTGTAGGAGCTAGCTAGCTGCCATTGTCGTTCTTCCAAGCTCCACCTTCGGTTCCTTTC
TCAGGAACTCGATCGTTTGCAAGTTAGCCATTGTTACATTTGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis