Browse Element(s) Details


Os.15168.1.S1_at

Description gb:AK059505.1
DB_XREF= gi:32969523
TID=Os.15168.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A10, full insert sequence.
FL= gb:AK059505.1 gb:AK104147.1 gb:AK058822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0241011/1140S ribosomal protein S13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02360Os.47354.1.A1_at11/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360OsAffx.9177.1.S1_x_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360Os.40400.1.S1_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02370Os.27951.1.S1_at11/118+934508..938062galactosyltransferase family protein, putative, expressed
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g02450Os.53900.1.S1_at11/118+974865..977756Sodium/hydrogen exchanger family protein, expressed
LOC_Os08g02460Os.25130.1.S1_at10/118+977708..981577expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006412biological_processprotein biosynthesis
GO:0009965biological_processleaf morphogenesis
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15168.1.S1_at--710--8091Chr08:957437..957461 (25 bp)
GGACTCCAAGTTCAGGCTTATTCTT
LOC_Os08g02410
Os.15168.1.S1_at--704--2471Chr08:956600..956624 (25 bp)
AACACTGGCGTGCTCTTAGATGCTT
LOC_Os08g02410
Os.15168.1.S1_at--822--1291Chr08:956583..956607 (25 bp)
AGATGCTTCGATATGGACCTGGTTC
LOC_Os08g02410
Os.15168.1.S1_at--164--10251Chr08:956457..956481 (25 bp)
TTTGGTTTCACAATTCTGTCTGTTA
LOC_Os08g02410
Os.15168.1.S1_at--40--7171Chr08:956440..956464 (25 bp)
GTCTGTTAAACATGCATCGGTATTT
LOC_Os08g02410
Os.15168.1.S1_at--253--9771Chr08:956385..956409 (25 bp)
TAATGTTCGGCATCGTTTGCATCCA
LOC_Os08g02410
Os.15168.1.S1_at--227--1571Chr08:956361..956385 (25 bp)
AGCTCTATCCCGTACTTTGGTATTG
LOC_Os08g02410
Os.15168.1.S1_at--397--10831Chr08:956339..956363 (25 bp)
TTGTGTTTGAACTCATCGTACGATG
LOC_Os08g02410
Os.15168.1.S1_at--547--10551Chr08:956310..956334 (25 bp)
TTCATAATTCTGGTTGATCGAGGCT
LOC_Os08g02410
Os.15168.1.S1_at--380--211Chr08:956284..956308 (25 bp)
ATTTGCTCACAAGCGCTTCTCATAG
LOC_Os08g02410
Os.15168.1.S1_at--745--1651Chr08:956273..956297 (25 bp)
AGCGCTTCTCATAGAACTTTTCACA
LOC_Os08g02410
Target Sequence 
GGACTCCAAGTTCAGGCTTATTCTTGTTGAGAGCAGGATCCACCGCCTCGCCCGCTACTATAAGCGCACAAAGAAGCTCC
CACCCACCTGGAAGTATGAGTCAACCACGGCCAGCACTCTGGTGGCCTAAGAGAACACTGGCGTGCTCTTAGATGCTTCG
ATATGGACCTGGTTCTAGAAATCAATTTATGTACTGCTTTGAGTTTGGAGCGAGTTAGACGTGGACAAGAAACTGCAAGT
TTTTCTATGTTTACTCGGGGGATCCTATAAACCATTTTTGGTTTCACAATTCTGTCTGTTAAACATGCATCGGTATTTTG
TTATTTACAATTAGCTGTTACCNTNACCATAATGTTCGGCATCGTTTGCATCCAGCTCTATCCCGTACTTTGGTATTGTG
TTTGAACTCATCGTACGATGTTAGTTCATAATTCTGGTTGATCGAGGCTNATTTGCTCACAAGCGCTTCTCATAGAACTT
TTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis