Browse Element(s) Details


Os.25130.1.S1_at

Description gb:AK102753.1
DB_XREF= gi:32987962
TID=Os.25130.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106N01, full insert sequence.
FL= gb:AK102753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0246010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g02450Os.53900.1.S1_at11/118+974865..977756Sodium/hydrogen exchanger family protein, expressed
LOC_Os08g02460Os.25130.1.S1_at10/118+977708..981577expressed protein
LOC_Os08g02470NANA8+988034..993870retrotransposon protein, putative, unclassified
LOC_Os08g02480NANA8+995411..997901retrotransposon protein, putative, unclassified
LOC_Os08g02490Os.8367.1.S1_at11/118+1001077..1004672AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25130.1.S1_at--56--5131Chr08:979278..979302 (25 bp)
GCAAAATCTGTCTGGTTGGGATCCC
LOC_Os08g02460
Os.25130.1.S1_at--971--10831Chr08:979263..979287 (25 bp)
TTGGGATCCCAGAGTGAACATGCTT
LOC_Os08g02460
Os.25130.1.S1_at--842--2491NONE
AACATGCTTGGCACTGGAACTGCTC
NONE
Os.25130.1.S1_at--413--5471Chr08:978072..978096 (25 bp)
GAACTGCTCGTTCTGGCATCCGAGA
LOC_Os08g02460
Os.25130.1.S1_at--200--5251Chr08:978044..978068 (25 bp)
GAATCAGATGCTTACGCTTCCAGCA
LOC_Os08g02460
Os.25130.1.S1_at--1066--7531Chr08:978000..978024 (25 bp)
GTGGCGCCAGTTCTTCTAGGACGAA
LOC_Os08g02460
Os.25130.1.S1_at--696--3651Chr08:977943..977967 (25 bp)
CTTAGTTCCCCAGTAGTATATGCAA
LOC_Os08g02460
Os.25130.1.S1_at--241--271Chr08:977926..977950 (25 bp)
ATATGCAACATACTGTTTCCACCCA
LOC_Os08g02460
Os.25130.1.S1_at--663--2191Chr08:977899..977923 (25 bp)
ACAAATGTAACTCGTGCTCACCTTG
LOC_Os08g02460
Os.25130.1.S1_at--452--2051Chr08:977852..977876 (25 bp)
ACTTTTGTGTCGTTTCTATGCTCAG
LOC_Os08g02460
Os.25130.1.S1_at--941--7111Chr08:977747..977771 (25 bp)
GTCAGTCTGTCACTTGCTGGACTAA
LOC_Os08g02460
Target Sequence 
GCAAAATCTGTCTGGTTGGGATCCCAGAGTGAACATGCTTGGCACTGGAACTGCTCGTTCTGGCATCCGAGATGGGAATC
AGATGCTTACGCTTCCAGCACCTGGCCCTGGTCAATCCCGTGGCGCCAGTTCTTCTAGGACGAAGAGGCCCACCCAGAAC
ACATCTTCCCGCCGCACTTAGTTCCCCAGTAGTATATGCAACATACTGTTTCCACCCAAAACAAATGTAACTCGTGCTCA
CCTTGGCAAATGATCTGTTAGTATAGTACTTTTGTGTCGTTTCTATGCTCAGCTTGCATGCAGAGCTACACGGGAAATGT
AAGAAAAGAAAACCTGCACTTTACCCAGGTTGGTCTCTTTGTGACCAAAACTGTCAGTCTGTCACTTGCTGGACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis