Browse Element(s) Details


Os.8367.1.S1_at

Description gb:AK068379.1
DB_XREF= gi:32978397
TID=Os.8367.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146N22, full insert sequence.
FL= gb:AK068379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0249011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02450Os.53900.1.S1_at11/118+974865..977756Sodium/hydrogen exchanger family protein, expressed
LOC_Os08g02460Os.25130.1.S1_at10/118+977708..981577expressed protein
LOC_Os08g02470NANA8+988034..993870retrotransposon protein, putative, unclassified
LOC_Os08g02480NANA8+995411..997901retrotransposon protein, putative, unclassified
LOC_Os08g02490Os.8367.1.S1_at11/118+1001077..1004672AT hook motif family protein, expressed
LOC_Os08g02500OsAffx.16792.1.S1_at11/118+1008469..1010649ACT domain-containing protein, putative
LOC_Os08g02500Os.5392.1.S1_at1/118+1008469..1010649ACT domain-containing protein, putative
LOC_Os08g02500OsAffx.25598.1.S1_x_at1/118+1008469..1010649ACT domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8367.1.S1_at--106--6691Chr08:1004072..1004096 (25 bp)
GTTCCAATCTCTAGTACCGATACGC
LOC_Os08g02490
Os.8367.1.S1_at--332--4171Chr08:1004245..1004269 (25 bp)
CGCCTCTGGAGCCTGAAACTGAGAT
LOC_Os08g02490
Os.8367.1.S1_at--728--671Chr08:1004286..1004310 (25 bp)
ATGAAATTCCTGGTCTGTCACTGCT
LOC_Os08g02490
Os.8367.1.S1_at--932--1311Chr08:1004345..1004369 (25 bp)
AGATGGCTTCATTTCTTTCTGACTT
LOC_Os08g02490
Os.8367.1.S1_at--384--6931Chr08:1004393..1004417 (25 bp)
GTAGGTTTTCCATCTTCAGGCAGAA
LOC_Os08g02490
Os.8367.1.S1_at--713--2551Chr08:1004424..1004448 (25 bp)
AACTGCAATTGCTGTAGCTGTCCCG
LOC_Os08g02490
Os.8367.1.S1_at--540--4731Chr08:1004440..1004464 (25 bp)
GCTGTCCCGATATTAGTCACTGTTT
LOC_Os08g02490
Os.8367.1.S1_at--6--9071Chr08:1004481..1004505 (25 bp)
TGCTTCCTTGTAACACCATGTCGGT
LOC_Os08g02490
Os.8367.1.S1_at--714--7451Chr08:1004571..1004595 (25 bp)
GTGTCTCTAGGCTTCTTTTTCATTT
LOC_Os08g02490
Os.8367.1.S1_at--872--9911Chr08:1004604..1004628 (25 bp)
TACTCCACTTAATTTGCTCCTGGTG
LOC_Os08g02490
Os.8367.1.S1_at--376--4791Chr08:1004619..1004643 (25 bp)
GCTCCTGGTGTACCCCTTATTAAAT
LOC_Os08g02490
Target Sequence 
GTTCCAATCTCTAGTACCGATACGCACAGCAGCGAGCAAGGGCAGCACAGCTCCGTCGCCCCAAGAACAACAAACATCGT
AACCTCAGCATACAACCCAGACCAGAGCTGGGCATCTCCTGCTCAGTCGATACCTGACAGCGCGAGAACACCATCGGGCG
ATGTGAAGGTCACCGCCTCTGGAGCCTGAAACTGAGATGAACTGACCAGGANCCATGAAATTCCTGGTCTGTCACTGCTG
CAGCCGCACACCATGATCGCCGGTGGCGGCCAAAGATGGCTTCATTTCTTTCTGACTTGTAAAAGATGTATCTGAGTTCC
AGTAGGTTTTCCATCTTCAGGCAGAAGAGTCTAACTGCAATTGCTGTAGCTGTCCCGATATTAGTCACTGTTTAAGCATC
AGGCTACCCTGCTTCCTTGTAACACCATGTCGGTCTTATTGGAGATTGGAGAGTTCTGTAGTTACAAAATTGTACTATTA
GTTCTGTGTGTGTGTGTGTGTGTCTCTAGGCTTCTTTTTCATTTTGTTGGATTACTCCACTTAATTTGCTCCTGGTGTAC
CCCTTATTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis